New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_pgi 3583428 =NA (NA)25 (0.470) 25/270 NT 43.1% intergenic (+10/‑55) yrhA/insA pseudogene, interrupted by IS1E/IS1 repressor TnpA
?NC_000913_3_hsa_pgi 3665150 = 33 (0.620)coding (661/825 nt) gadX acid resistance regulon transcriptional activator; autoactivator

AACGGTCAGTGCCGTAAAAATTCCCTTGCGCAACAATACTTGCCGCCGAGTCACGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCTTCTTCGCGCAATTTTTTCTTTAACAGACTTGGA  >  NC_000913_3_hsa_pgi/3665009‑3665298
                                                                                                                                             |                                                                                                                                                     
aaCGGTCAGGGCCGTAAAAATTCCCTTGCGCAACAATACTTGCCGCCGAGCAACTGTTCGACAATCTCTGCGCCGATCGCGCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGa                                                                                                                                                <  1:783577/149‑1 (MQ=255)
 gcGGTCGGGGTCGTAAAAGTTTCCTTGCGGAACAATACTTGCGGCCGAGTCACGGTTCGATAATCTCTGCGCCGATCGCTCCGGATACGCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGat                                                                                                                                               <  2:21530/148‑1 (MQ=255)
       ggccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcaccaccCGCTGTGATATCcac                                                                                                                                         <  1:674373‑M2/15‑1 (MQ=255)
       aGTGCCGTAAAAATTCCCTTGCGCAACAATACTTGCCGCCGAGTCACGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATggtaat                                                                                                                                         >  2:811160‑M2/1‑143 (MQ=255)
       aGTGCCGTAAAAATTCCCTAGCGCTACCTTACTTGCCGGCGAGTCACGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGATATACGAAACGCTGTTGTATctgc                                                                                                                                         <  2:675029/149‑4 (MQ=255)
              tAAAAATTCCCTTGCGCAACAATACTTGCCGCCGAGTCACGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATAc                                                                                                                                  >  2:803687/1‑149 (MQ=255)
              tAAAAATTCCCATGCGCAACAATACTTGCCGCCGAGTCACGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAgactac                                                                                                                                  >  1:615589/1‑144 (MQ=255)
                              caacaaTACTTGCCGCCGAGTCACTTTTCTACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGGCATCCCAGAAGAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgtt                                                                                                                  >  1:781916‑M2/1‑120 (MQ=255)
                               aacaaTACTTGCCGCCGAGTCACGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTg                                                                                                                >  1:798784/1‑149 (MQ=255)
                                   aTACTTGCCGCCGAGTCACGGTACGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGaaaa                                                                                                            <  2:130008/149‑1 (MQ=255)
                                      cTTGCCGCCGAGTCACGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTTTGATATCCACAGGATACTGCAACTCGCTTAATTGa                                                                                                               <  2:719006/143‑1 (MQ=255)
                                      cTTGCCGCCGAGTCACGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGa                                                                                                               >  1:719006/1‑143 (MQ=255)
                                        cgtcagtagctaaacaggcgggacagctgatataacgtgaagcccctgtagcacctcaaaactaccatcataccctagatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCAt                                                                                                       <  2:305116‑M2/48‑1 (MQ=255)
                                         gtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATg                                                                                                      <  1:537113‑M2/49‑1 (MQ=255)
                                              tagctgaacaggagggacagctgatagaaacagatgctattgtagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATaa                                                                                                 <  1:385550‑M2/54‑1 (MQ=255)
                                                aGGCACGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcc                                                                                                >  1:216908‑M2/1‑102 (MQ=255)
                                                    aacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATaa                                                                                           >  1:750909‑M2/90‑149 (MQ=255)
                                                    aCGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATggtaataaacccaacttattaagagtgttatatgttcagataatgcccgat                                                                                            <  1:115667‑M2/149‑52 (MQ=255)
                                                    aCGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATaa                                                                                           <  1:581681/149‑1 (MQ=255)
                                                        ttgcaCAATCTCTGCGACAAACGCTCCGGATACTCTGTGGACTGCACTCTATAAAAATTTCCAAAGACGTAAATGAAACACTACACTCTCTGATATCCACAGTATACTGCAACTCGATTAATTTAAAAACCATGTATAACAATAAGTTg                                                                                       <  2:107001/145‑1 (MQ=255)
                                                        ggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACCCGCTTAATTGAAAAACCATGTATAACAATAAGTTg                                                                                       <  1:44231‑M2/64‑1 (MQ=255)
                                                          cGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACCGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCa                                                                                     <  1:698595/149‑1 (MQ=255)
                                                            acacTCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCaaa                                                                                   >  1:905371/1‑149 (MQ=255)
                                                            aCAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagctcatgcccggtgactttgt                                                                                    <  1:130404‑M2/149‑60 (MQ=255)
                                                               aTCTCTGCGCCGATTGGTCCTGATACTCTGTGGGAGTTATCACATAATAATTTCGAAAGAAGTAAATGAAATACGAGACGCTGTGATATCTACAGGATAATGCAACTCGCTTAATTGAAAAATCATAGAAAAAAATAAGTTggacatac                                                                                >  2:444021/1‑142 (MQ=255)
                                                                      cgcCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGAAACTCGCTTAATTGACAAACCATATATAACAATAAGTTGCAAAGCACGTTGCa                                                                         >  1:480240/1‑149 (MQ=255)
                                                                         cGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCCGTGATggtaatgactccaactgattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccac                                                                       <  2:140575‑M2/149‑73 (MQ=255)
                                                                         cGACCGTTCGTGATGTTCTGTGGGCGGCATCCCATAATAATTTCGAAAGACGGAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccac                                                                       >  2:250116‑M2/1‑77 (MQ=255)
                                                                              gaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTCCAAAGCACGTTACATTCTacac                                                                 >  2:597902‑M2/64‑149 (MQ=255)
                                                                               aagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACt                                                                >  2:64723‑M2/63‑149 (MQ=255)
                                                                                 gccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCa                                                              <  1:516349‑M2/89‑1 (MQ=255)
                                                                                  cgtatacTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATggtaatgactccaacttagtgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttga                                                              >  1:345566‑M2/4‑68 (MQ=255)
                                                                                  cTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttga                                                              >  1:342062‑M2/1‑68 (MQ=255)
                                                                                    gATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAATGATGAAGAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTa                                                           >  1:830996/1‑149 (MQ=255)
                                                                                    gATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGAACTCTGCAGTCTACACTCAGTa                                                           >  2:738534/1‑149 (MQ=255)
                                                                                     ctggagcacctcaaaatcaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCACAGCACGTTGCATTCTACACTCAGTaa                                                          <  2:902922‑M2/93‑1 (MQ=255)
                                                                                        ctctGTGGGCGTCATCTAATAATAAATTCTAAAGACGTAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacga                                                        >  1:730657‑M2/1‑62 (MQ=255)
                                                                                        ctctGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGATGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatattgagaacga                                                        <  2:963561‑M2/149‑88 (MQ=255)
                                                                                         tctGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcccccgattttgagaacgac                                                       <  1:459640‑M2/149‑89 (MQ=255)
                                                                                         tctGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgac                                                       <  1:767792‑M2/149‑89 (MQ=255)
                                                                                         tctGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTTCAAAGCACGTTGCATTCTACACTCAGTAAGCaa                                                      >  1:15043/1‑149 (MQ=255)
                                                                                         agcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGAAAAGCACGTTGCATTCTACACTCAGTAAGaaa                                                      >  2:648539‑M2/53‑149 (MQ=255)
                                                                                           tgtgGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacag                                                     <  1:974471‑M2/149‑91 (MQ=255)
                                                                                            ttgGGCGTCATCCCATTATAATTTCGAAAGACGTAACTGAAATACGACGCTCTGTGATATCCATAGCATTCTGAAACTCGCGTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACTTTGCATTCTACACTCAGTAAGCAACtg                                                   <  2:756161/148‑1 (MQ=255)
                                                                                               tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGa                                                >  1:486001‑M2/47‑149 (MQ=255)
                                                                                                 aaaaccaccatcatacactaaatcaggaagttggcagcatcaccCGTTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAat                                              <  1:413456‑M2/105‑1 (MQ=255)
                                                                                                 aaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACt                                                                                                                                 >  2:310862‑M2/45‑67 (MQ=255)
                                                                                                 aaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACt                                                                                                                                 <  1:310862‑M2/23‑1 (MQ=255)
                                                                                                      caccctcatatactaaatcagaaagttggcaccatcaccGGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATatgat                                         <  2:328437‑M2/110‑1 (MQ=255)
                                                                                                       cccATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTAGATTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGAATTCTACACTCAGTAAGAAACTGTGAATatgatg                                        >  2:112378/1‑149 (MQ=255)
                                                                                                       accatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAGGCAACTGTGAATattatg                                        >  2:206694‑M2/39‑149 (MQ=255)
                                                                                                        ccATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCAt                                                                        >  2:580717/1‑116 (MQ=255)
                                                                                                        ccATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCAt                                                                        <  1:580717/116‑1 (MQ=255)
                                                                                                        ccATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGt                                       <  1:803687/149‑1 (MQ=255)
                                                                                                           tcatacactaaatcagtaagttggcaggatcaccCGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGtctc                                    <  2:39488‑M2/115‑1 (MQ=255)
                                                                                                           tcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGtctc                                    >  1:592806‑M2/35‑149 (MQ=255)
                                                                                                            aataatTTCGAAAGACGTAAATGAAATACGACACGCTTTGATggtaatgactccaacttatttatagtgttttatgttcagataatgcccgatgactttggcatgcagctccaccgattttgagaacgacagcgacttccgtcccagcc                                    >  1:15091‑M2/1‑42 (MQ=255)
                                                                                                              tccactaaatcaggaagtacgcagcatcaccCGCTGGGAGATCCCCAGGATACTGCAACTCGCTTAATTGAAAATCCATGTATAACAAGAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCtcttc                                 <  1:480355‑M2/118‑1 (MQ=255)
                                                                                                              tacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCtcttc                                 >  1:14248‑M2/32‑149 (MQ=255)
                                                                                                              taatTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAAGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCtcttc                                 <  2:726908/149‑1 (MQ=255)
                                                                                                                 tttCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCttcttc                              >  2:527500/1‑149 (MQ=255)
                                                                                                                 tttCAAAAGACGTAAATGAAATACGACACGCTGTGATATACACTGGATCCTTTGACACTCTTACTTGATCAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCttcttc                              <  1:944287/149‑1 (MQ=255)
                                                                                                                    cGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCTTCTTcgcg                           <  1:527500/149‑1 (MQ=255)
                                                                                                                     aatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTAAGTAAGGAACTGTGGTTATGATGTCTCTTATTCgcgc                          >  2:843002‑M2/25‑149 (MQ=255)
                                                                                                                      aaaGACGTAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcacccggttatatggacgacagcgacttccgtcccagccgtgccaggtg                          <  1:779525‑M2/149‑118 (MQ=255)
                                                                                                                        agaagaaaaTGANATACGACACTCTGTAANAACCAAAGGNTACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCTTCTTCGCGCAAt                       <  1:71322/143‑1 (MQ=255)
                                                                                                                            gTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTAGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTATTCTTCGCGCAAttttt                   >  2:74113/1‑149 (MQ=255)
                                                                                                                            aagttggcagcatcaccCGGTGTGAGATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTGTCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCTTCTTCGCGCAAttttt                   <  2:309333‑M2/132‑1 (MQ=255)
                                                                                                                             tAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctc                   <  2:496541‑M2/149‑125 (MQ=255)
                                                                                                                             tAAAAGAAATACGACACGCTGTGATATCCACAGGATCCTGCAATCACTTTAATTGAAAAACCATGTATAACAATAAGTTACAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCTTCTTCGCGCAAtttttt                  <  2:502673/149‑1 (MQ=255)
                                                                                                                                tgggatcatcaccCGCTGTGATATCCACAGGATACTGCATCTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCACATCACGTTGCATTCTACACTCAGTAAGCAACTGTGTATATGATGTCTCTTCTTCGCGCAATTTTTTCtt               <  2:824865‑M2/136‑1 (MQ=255)
                                                                                                                                  gcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACACTAATTTGCAAAGCACGTTCGTTGGTACACTCAGTAAGCAACTATGAATATGATGTCTCTTCTTCACGCAATTTTTTCTTTa             >  1:736050‑M2/12‑149 (MQ=255)
                                                                                                                                   aaaTACGACACGCTGTGATTTTCATAGTATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCTTCTTCGCGCAATTTTTTCTTTaa            <  2:755495/149‑1 (MQ=255)
                                                                                                                                   aaaTACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATGCTACACAAAGTGAATAACTGTGAATATGATGTCTCTTCTTCGCGCAATTTTTTCTTTaa            <  1:237074/149‑1 (MQ=255)
                                                                                                                                     aTACGACACGCTGTGATggtaatgcctccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgccagcgacttccgtcccagccgtgccaggtgctgcctcagattcag           >  2:6749‑M2/1‑17 (MQ=255)
                                                                                                                                     aTACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaagtgctgcctcagattcag           <  1:22025‑M2/149‑133 (MQ=255)
                                                                                                                                      tACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaacgatttttagaacgacagcgacttccgtcccagccgtgccaggtgctgcatcagattcagg          <  1:326219‑M2/149‑134 (MQ=255)
                                                                                                                                      tACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCTTCTTCGCGCAATTTTTTCTTTAAcgg         >  2:229188/1‑147 (MQ=255)
                                                                                                                                             cGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCTTCTTCGCGCAATTTTTTCTTTAACAGACTTGGa  <  1:564505/149‑1 (MQ=255)
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AACGGTCAGTGCCGTAAAAATTCCCTTGCGCAACAATACTTGCCGCCGAGTCACGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCTTCTTCGCGCAATTTTTTCTTTAACAGACTTGGA  >  NC_000913_3_hsa_pgi/3665009‑3665298

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.