New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_pgi = 3584195NA (NA)20 (0.370) 18/270 NT 37.7% intergenic (+15/‑1) insB1/yrhA IS1 transposase B/pseudogene, interrupted by IS1E
?NC_000913_3_hsa_pgi = 3665158 33 (0.620)coding (653/825 nt) gadX acid resistance regulon transcriptional activator; autoactivator

ACGGTCAGTGCCGTAAAAATTCCCTTGCGCAACAATACTTGCCGCCGAGTCACGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCTTCTTCGCGCAATTTTTTCTTTAACAGACTTGGACTCATCA  >  NC_000913_3_hsa_pgi/3665010‑3665305
                                                                                                                                                    |                                                                                                                                                    
gcGGTCGGGGTCGTAAAAGTTTCCTTGCGGAACAATACTTGCGGCCGAGTCACGGTTCGATAATCTCTGCGCCGATCGCTCCGGATACGCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGat                                                                                                                                                      <  2:21530/148‑1 (MQ=255)
      ggccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcaccaccCGCTGTGATATCcac                                                                                                                                                <  1:674373‑M2/15‑1 (MQ=255)
      aGTGCCGTAAAAATTCCCTTGCGCAACAATACTTGCCGCCGAGTCACGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATggtaat                                                                                                                                                >  2:811160‑M2/1‑143 (MQ=255)
      aGTGCCGTAAAAATTCCCTAGCGCTACCTTACTTGCCGGCGAGTCACGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGATATACGAAACGCTGTTGTATctgc                                                                                                                                                <  2:675029/149‑4 (MQ=255)
             tAAAAATTCCCTTGCGCAACAATACTTGCCGCCGAGTCACGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATAc                                                                                                                                         >  2:803687/1‑149 (MQ=255)
             tAAAAATTCCCATGCGCAACAATACTTGCCGCCGAGTCACGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAgactac                                                                                                                                         >  1:615589/1‑144 (MQ=255)
                             caacaaTACTTGCCGCCGAGTCACTTTTCTACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGGCATCCCAGAAGAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgtt                                                                                                                         >  1:781916‑M2/1‑120 (MQ=255)
                              aacaaTACTTGCCGCCGAGTCACGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTg                                                                                                                       >  1:798784/1‑149 (MQ=255)
                                  aTACTTGCCGCCGAGTCACGGTACGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGaaaa                                                                                                                   <  2:130008/149‑1 (MQ=255)
                                     cTTGCCGCCGAGTCACGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTTTGATATCCACAGGATACTGCAACTCGCTTAATTGa                                                                                                                      <  2:719006/143‑1 (MQ=255)
                                     cTTGCCGCCGAGTCACGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGa                                                                                                                      >  1:719006/1‑143 (MQ=255)
                                       cgtcagtagctaaacaggcgggacagctgatataacgtgaagcccctgtagcacctcaaaactaccatcataccctagatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCAt                                                                                                              <  2:305116‑M2/48‑1 (MQ=255)
                                        gtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATg                                                                                                             <  1:537113‑M2/49‑1 (MQ=255)
                                             tagctgaacaggagggacagctgatagaaacagatgctattgtagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATaa                                                                                                        <  1:385550‑M2/54‑1 (MQ=255)
                                               aGGCACGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcc                                                                                                       >  1:216908‑M2/1‑102 (MQ=255)
                                                   aacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATaa                                                                                                  >  1:750909‑M2/90‑149 (MQ=255)
                                                   aCGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATggtaataaacccaacttattaagagtgttatatgttcagataatgcccgat                                                                                                   <  1:115667‑M2/149‑52 (MQ=255)
                                                   aCGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATaa                                                                                                  <  1:581681/149‑1 (MQ=255)
                                                       ttgcaCAATCTCTGCGACAAACGCTCCGGATACTCTGTGGACTGCACTCTATAAAAATTTCCAAAGACGTAAATGAAACACTACACTCTCTGATATCCACAGTATACTGCAACTCGATTAATTTAAAAACCATGTATAACAATAAGTTg                                                                                              <  2:107001/145‑1 (MQ=255)
                                                       ggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACCCGCTTAATTGAAAAACCATGTATAACAATAAGTTg                                                                                              <  1:44231‑M2/64‑1 (MQ=255)
                                                         cGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACCGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCa                                                                                            <  1:698595/149‑1 (MQ=255)
                                                           acacTCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCaaa                                                                                          >  1:905371/1‑149 (MQ=255)
                                                           aCAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagctcatgcccggtgactttgt                                                                                           <  1:130404‑M2/149‑60 (MQ=255)
                                                              aTCTCTGCGCCGATTGGTCCTGATACTCTGTGGGAGTTATCACATAATAATTTCGAAAGAAGTAAATGAAATACGAGACGCTGTGATATCTACAGGATAATGCAACTCGCTTAATTGAAAAATCATAGAAAAAAATAAGTTggacatac                                                                                       >  2:444021/1‑142 (MQ=255)
                                                                     cgcCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGAAACTCGCTTAATTGACAAACCATATATAACAATAAGTTGCAAAGCACGTTGCa                                                                                >  1:480240/1‑149 (MQ=255)
                                                                        cGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCCGTGATggtaatgactccaactgattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccac                                                                              <  2:140575‑M2/149‑73 (MQ=255)
                                                                        cGACCGTTCGTGATGTTCTGTGGGCGGCATCCCATAATAATTTCGAAAGACGGAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccac                                                                              >  2:250116‑M2/1‑77 (MQ=255)
                                                                             gaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTCCAAAGCACGTTACATTCTacac                                                                        >  2:597902‑M2/64‑149 (MQ=255)
                                                                              aagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACt                                                                       >  2:64723‑M2/63‑149 (MQ=255)
                                                                                gccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCa                                                                     <  1:516349‑M2/89‑1 (MQ=255)
                                                                                 cgtatacTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATggtaatgactccaacttagtgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttga                                                                     >  1:345566‑M2/4‑68 (MQ=255)
                                                                                 cTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttga                                                                     >  1:342062‑M2/1‑68 (MQ=255)
                                                                                   gATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAATGATGAAGAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTa                                                                  >  1:830996/1‑149 (MQ=255)
                                                                                   gATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGAACTCTGCAGTCTACACTCAGTa                                                                  >  2:738534/1‑149 (MQ=255)
                                                                                    ctggagcacctcaaaatcaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCACAGCACGTTGCATTCTACACTCAGTaa                                                                 <  2:902922‑M2/93‑1 (MQ=255)
                                                                                       ctctGTGGGCGTCATCTAATAATAAATTCTAAAGACGTAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacga                                                               >  1:730657‑M2/1‑62 (MQ=255)
                                                                                       ctctGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGATGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatattgagaacga                                                               <  2:963561‑M2/149‑88 (MQ=255)
                                                                                        tctGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcccccgattttgagaacgac                                                              <  1:459640‑M2/149‑89 (MQ=255)
                                                                                        tctGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgac                                                              <  1:767792‑M2/149‑89 (MQ=255)
                                                                                        tctGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTTCAAAGCACGTTGCATTCTACACTCAGTAAGCaa                                                             >  1:15043/1‑149 (MQ=255)
                                                                                        agcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGAAAAGCACGTTGCATTCTACACTCAGTAAGaaa                                                             >  2:648539‑M2/53‑149 (MQ=255)
                                                                                          tgtgGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacag                                                            <  1:974471‑M2/149‑91 (MQ=255)
                                                                                           ttgGGCGTCATCCCATTATAATTTCGAAAGACGTAACTGAAATACGACGCTCTGTGATATCCATAGCATTCTGAAACTCGCGTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACTTTGCATTCTACACTCAGTAAGCAACtg                                                          <  2:756161/148‑1 (MQ=255)
                                                                                              tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGa                                                       >  1:486001‑M2/47‑149 (MQ=255)
                                                                                                aaaaccaccatcatacactaaatcaggaagttggcagcatcaccCGTTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAat                                                     <  1:413456‑M2/105‑1 (MQ=255)
                                                                                                aaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACt                                                                                                                                        <  1:310862‑M2/23‑1 (MQ=255)
                                                                                                aaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACt                                                                                                                                        >  2:310862‑M2/45‑67 (MQ=255)
                                                                                                     caccctcatatactaaatcagaaagttggcaccatcaccGGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATatgat                                                <  2:328437‑M2/110‑1 (MQ=255)
                                                                                                      cccATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTAGATTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGAATTCTACACTCAGTAAGAAACTGTGAATatgatg                                               >  2:112378/1‑149 (MQ=255)
                                                                                                      accatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAGGCAACTGTGAATattatg                                               >  2:206694‑M2/39‑149 (MQ=255)
                                                                                                       ccATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCAt                                                                               >  2:580717/1‑116 (MQ=255)
                                                                                                       ccATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCAt                                                                               <  1:580717/116‑1 (MQ=255)
                                                                                                       ccATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGt                                              <  1:803687/149‑1 (MQ=255)
                                                                                                          tcatacactaaatcagtaagttggcaggatcaccCGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGtctc                                           <  2:39488‑M2/115‑1 (MQ=255)
                                                                                                          tcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGtctc                                           >  1:592806‑M2/35‑149 (MQ=255)
                                                                                                           aataatTTCGAAAGACGTAAATGAAATACGACACGCTTTGATggtaatgactccaacttatttatagtgttttatgttcagataatgcccgatgactttggcatgcagctccaccgattttgagaacgacagcgacttccgtcccagcc                                           >  1:15091‑M2/1‑42 (MQ=255)
                                                                                                             tccactaaatcaggaagtacgcagcatcaccCGCTGGGAGATCCCCAGGATACTGCAACTCGCTTAATTGAAAATCCATGTATAACAAGAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCtcttc                                        <  1:480355‑M2/118‑1 (MQ=255)
                                                                                                             tacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCtcttc                                        >  1:14248‑M2/32‑149 (MQ=255)
                                                                                                             taatTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAAGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCtcttc                                        <  2:726908/149‑1 (MQ=255)
                                                                                                                tttCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCttcttc                                     >  2:527500/1‑149 (MQ=255)
                                                                                                                tttCAAAAGACGTAAATGAAATACGACACGCTGTGATATACACTGGATCCTTTGACACTCTTACTTGATCAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCttcttc                                     <  1:944287/149‑1 (MQ=255)
                                                                                                                   cGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCTTCTTcgcg                                  <  1:527500/149‑1 (MQ=255)
                                                                                                                    aatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTAAGTAAGGAACTGTGGTTATGATGTCTCTTATTCgcgc                                 >  2:843002‑M2/25‑149 (MQ=255)
                                                                                                                     aaaGACGTAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcacccggttatatggacgacagcgacttccgtcccagccgtgccaggtg                                 <  1:779525‑M2/149‑118 (MQ=255)
                                                                                                                       agaagaaaaTGANATACGACACTCTGTAANAACCAAAGGNTACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCTTCTTCGCGCAAt                              <  1:71322/143‑1 (MQ=255)
                                                                                                                           gTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTAGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTATTCTTCGCGCAAttttt                          >  2:74113/1‑149 (MQ=255)
                                                                                                                           aagttggcagcatcaccCGGTGTGAGATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTGTCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCTTCTTCGCGCAAttttt                          <  2:309333‑M2/132‑1 (MQ=255)
                                                                                                                            tAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctc                          <  2:496541‑M2/149‑125 (MQ=255)
                                                                                                                            tAAAAGAAATACGACACGCTGTGATATCCACAGGATCCTGCAATCACTTTAATTGAAAAACCATGTATAACAATAAGTTACAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCTTCTTCGCGCAAtttttt                         <  2:502673/149‑1 (MQ=255)
                                                                                                                               tgggatcatcaccCGCTGTGATATCCACAGGATACTGCATCTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCACATCACGTTGCATTCTACACTCAGTAAGCAACTGTGTATATGATGTCTCTTCTTCGCGCAATTTTTTCtt                      <  2:824865‑M2/136‑1 (MQ=255)
                                                                                                                                 gcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACACTAATTTGCAAAGCACGTTCGTTGGTACACTCAGTAAGCAACTATGAATATGATGTCTCTTCTTCACGCAATTTTTTCTTTa                    >  1:736050‑M2/12‑149 (MQ=255)
                                                                                                                                  aaaTACGACACGCTGTGATTTTCATAGTATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCTTCTTCGCGCAATTTTTTCTTTaa                   <  2:755495/149‑1 (MQ=255)
                                                                                                                                  aaaTACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATGCTACACAAAGTGAATAACTGTGAATATGATGTCTCTTCTTCGCGCAATTTTTTCTTTaa                   <  1:237074/149‑1 (MQ=255)
                                                                                                                                    aTACGACACGCTGTGATggtaatgcctccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgccagcgacttccgtcccagccgtgccaggtgctgcctcagattcag                  >  2:6749‑M2/1‑17 (MQ=255)
                                                                                                                                    aTACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaagtgctgcctcagattcag                  <  1:22025‑M2/149‑133 (MQ=255)
                                                                                                                                     tACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaacgatttttagaacgacagcgacttccgtcccagccgtgccaggtgctgcatcagattcagg                 <  1:326219‑M2/149‑134 (MQ=255)
                                                                                                                                     tACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCTTCTTCGCGCAATTTTTTCTTTAAcgg                >  2:229188/1‑147 (MQ=255)
                                                                                                                                            cgccgcgATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAATTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCTTCTTCGCGCAATTTTTTCTTTAACAGACTTGGa         <  1:64557/143‑1 (MQ=255)
                                                                                                                                            cgatgtgATATCCACAAGATACTGCAACTTGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAATCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCTTCTTCGCGCAATTTTTTCTTTAACAGACTTGGa         <  2:181732/146‑1 (MQ=255)
                                                                                                                                            cGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCTTCTTCGCGCAATTTTTTCTTTAACAGACTTGGa         <  1:564505/149‑1 (MQ=255)
                                                                                                                                              cTGGGATATCCAATGGAGACTGCAACTCGCTTAATTGAAACACCATGTATAACAGTAAGTTGCAACACACGCGGCACTGCACACTCAGTAAGCAACTGTGAATATGATGTCTCTTCTTCGCGCAATTTTTTCTTTAACAGACTTGGACt       <  2:864233/149‑1 (MQ=255)
                                                                                                                                                 tgATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCTTCTTCGCGCAATTTTTTCTTTAACAGACTTGGACtcat    <  2:480240/149‑1 (MQ=255)
                                                                                                                                                   atatCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAAATGTGAATATGATGTCTCTTCTTCGCGCAATTTTTTCTTTAACAGACTTGGAAtaatca  >  1:401151/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
ACGGTCAGTGCCGTAAAAATTCCCTTGCGCAACAATACTTGCCGCCGAGTCACGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGCTTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCTTCTTCGCGCAATTTTTTCTTTAACAGACTTGGACTCATCA  >  NC_000913_3_hsa_pgi/3665010‑3665305

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.