mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_KO_pgi | 4,294,494 | 0 | C | T | 27.1% | 126.9 / 53.6 | 85 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 108 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_KO_pgi | = 4040683 | 56 (0.870) | 21 (0.330) | 14/276 | 5.5 | 27.6% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913_3_KO_pgi | = 4213162 | NA (NA) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913_3_KO_pgi | = 3946824 | 12 (0.190) | 15 (0.240) | 14/276 | 5.5 | 30.7% | intergenic (+5/‑48) | rrfC/aspT | 5S ribosomal RNA of rrnC operon/tRNA‑Asp |
| ? | NC_000913_3_KO_pgi | = 4040681 | 56 (0.890) | intergenic (+45/+225) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913_3_KO_pgi | 3423665 = | NA (NA) | 16 (0.250) | 14/276 | 5.5 | 22.5% | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_KO_pgi | = 4040683 | 56 (0.870) | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913_3_KO_pgi | = 225281 | NA (NA) | 9 (0.150) | 9/270 | 7.3 | NA | noncoding (1511/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_KO_pgi | = 225293 | NA (NA) | noncoding (1523/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_KO_pgi | 4171839 = | 44 (0.690) | 8 (0.130) | 8/262 | 7.5 | 16.0% | intergenic (+83/‑218) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | NC_000913_3_KO_pgi | 4171862 = | 43 (0.720) | intergenic (+106/‑195) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913_3_KO_pgi | 4040719 = | 40 (0.620) | 8 (0.130) | 8/262 | 7.5 | 16.6% | intergenic (+83/+187) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913_3_KO_pgi | 4171862 = | 43 (0.720) | intergenic (+106/‑195) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913_3_KO_pgi | = 3423340 | 51 (0.800) | 8 (0.130) | 8/262 | 7.5 | 15.0% | intergenic (+146/+83) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_KO_pgi | 4171862 = | 43 (0.720) | intergenic (+106/‑195) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913_3_KO_pgi | = 3226187 | 62 (0.970) | 8 (0.130) | 8/262 | 7.5 | 12.3% | intergenic (+16/‑47) | ebgC/ygjI | evolved beta‑D‑galactosidase, beta subunit; cupin superfamily/putative transporter |
| ? | NC_000913_3_KO_pgi | = 3226192 | 56 (0.930) | intergenic (+21/‑42) | ebgC/ygjI | evolved beta‑D‑galactosidase, beta subunit; cupin superfamily/putative transporter | |||||
| * | ? | NC_000913_3_KO_pgi | = 2632583 | 59 (0.920) | 9 (0.150) | 8/262 | 7.5 | 13.5% | intergenic (‑48/+21) | guaA/guaB | GMP synthetase (glutamine aminotransferase)/IMP dehydrogenase |
| ? | NC_000913_3_KO_pgi | = 2632588 | 60 (1.000) | intergenic (‑53/+16) | guaA/guaB | GMP synthetase (glutamine aminotransferase)/IMP dehydrogenase | |||||
| * | ? | NC_000913_3_KO_pgi | 3423376 = | 51 (0.800) | 8 (0.130) | 8/276 | 7.9 | 21.0% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_KO_pgi | = 3946822 | 10 (0.160) | intergenic (+3/‑50) | rrfC/aspT | 5S ribosomal RNA of rrnC operon/tRNA‑Asp | |||||