New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_KO_pgi = 2945992NA (NA)9 (0.120) 8/264 8.8 8.4% noncoding (97/97 nt) RIP206 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP206 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913_3_KO_pgi = 4455622 98 (1.260)noncoding (4/84 nt) REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_KO_pgi/2945838‑2945992
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTCTTCGCCAGCCCATCCAGCAGTTTCTGATGGATCCCACCAAAACCGCCGTTGCTCATCACCAGAATATGGTCGCCAGGCTGAGCGGTTTTCACCACC  <  NC_000913_3_KO_pgi/4455622‑4455475
                                                                                                                                                                                                                                                                                                               
GACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTTTCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCAT                                                                                                                                                           <  1:936929/150‑1
   ATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATACTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCCTCCG                                                                                                                                                        >  1:423430/1‑150
    TAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCCCAATTGCCTTATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGG                                                                                                                                                       <  1:931120/150‑1
          CTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTGCTGCAATATTTTGGATTTGCATTATTTGTAGGTCGGATAAGACGTTATCGCCGCGTCCGGCCTggc                                                                                                                                                 >  2:41465/1‑147
           TCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAAGATTTTGGATTTGCATGATTTGTAGGCAGGATAAGGCGTTCACGCCGCCTCCGGCCTgacc                                                                                                                                                >  2:449538/1‑146
                                     CCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC                                                                                                                                                      >  2:1132117/1‑118
                                     CCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC                                                                                                                                                      <  1:1132117/118‑1
                                                                                                                            GGCCGGATAAGGCGTTCACGCCGCATAAGGTCCAGTCAAACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTCTTCGCCAGCCCATCCAGCAGTTTCTGATGGCTCCCACCAAAACCGCCGTTGCTCATCACCAGAATAT                               >  1:727763/1‑150
                                                                                                                                 GATAAGGCGTTCACGCCGCATCCGGCCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTCTTC                                                                                               <  1:1361596/81‑1
                                                                                                                                 GATAAGGCGTTCACGCCGCATCCGGCCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTCTTC                                                                                               >  2:1361596/1‑81
                                                                                                                                  ATAAGGCGTTCACGCCGCATCCGGCCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTC                                                                                                  <  1:869264/77‑1
                                                                                                                                  ATAAGGCGTTCACGCCGCATCCGGCCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTC                                                                                                  >  2:869264/1‑77
                                                                                                                                   TAAGGCGTTCACGCCGCATCCGGCCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTCTTCGCCAGCCCATCCAGCAGTTTCTGATGGATCCCACCAAAACCGCCGTTGCTCATCACCAGAATATGGTCGCC                        >  1:1191268/1‑150
                                                                                                                                             ACGCCTCATCCGGCCTACGCATACTATATCTGGCTAAGGCCGCATTACTGCGCGGCTTCCGCCTTCTTCGCCAGCCCATCCAGCAGTTTCTGATGGATCCCACCAAAACCGCCGTTGCTCATCACCAGAATATGGTCGCCAGGCTGAGCG              <  1:275271/150‑1
                                                                                                                                                     TCCGGCCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTCTTCGCCAGCCCATCCAGCAGTTTCTGATGGATCCCACCAAAACCGCCGTTGCTCATCACCAGAATATGGTCGCCAGGCTGAGCGGTTTTCAC      >  1:96964/1‑150
                                                                                                                                                     TCCGGCCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTCTTCGCCAGCCCATCCAGCAGTTTCTGATGGATCCCACCAAAACCGCCGTTGCTCATCACCAGAATATGGTCGCCAGGCTGAGCGGTTTTCAC      >  1:832061/1‑150
                                                                                                                                                     TCCGGCCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTCTTCGCCAGCCCATCCAGCAGTTTCTGATGGATCCCACCAAAACCGCCGTTGCTCATCACCAGAATATGGTCGCCAGGCTGAGCGGTTTTCAC      <  1:1387808/150‑1
                                                                                                                                                      CCGGCCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTGCGCCTTCTTCGCCAGCCCATCCAGCAGTTTCTGATGGATCCCACCAAAACCGCCGTTGCTCATCACCAGAATATGGTCGCCAGGCTGAGCGGTTTTCACC     >  1:1372028/1‑150
                                                                                                                                                         GCCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTCTTCGCCAGCCCATCCAGCAGTTTCTGATGGATCCCACCAAAACCGCCGTTGCTCATCACCAGAATATGGTCGCCAGGCTGAGCGGTTTTCACCACC  >  2:1350324/1‑150
                                                                                                                                                                                                                                                                                                               
GACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_KO_pgi/2945838‑2945992
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTCTTCGCCAGCCCATCCAGCAGTTTCTGATGGATCCCACCAAAACCGCCGTTGCTCATCACCAGAATATGGTCGCCAGGCTGAGCGGTTTTCACCACC  <  NC_000913_3_KO_pgi/4455622‑4455475

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.