| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_KO_pgi | 501446 = | NA (NA) | 4 (0.160) +GCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATAC |
4/196 | 3.5 | 13.2% | noncoding (3/84 nt) | REP46 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP46 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_KO_pgi | 2282818 = | 38 (1.040) | intergenic (+17/+122) | rplY/yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGATGCGGCGTGAACGCCTTATCTGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_KO_pgi/501474‑501446‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAACCCCGCTCCGGCGGGGTTTTTT > NC_000913_3_KO_pgi/2282818‑2282845 ||||||||||||||||||||||||||||||||||||||||||| AGATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGCTCCGGCGGGGTTTTT > 1:17839/1‑99AGATGCGGCGTGAACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGCTCCGGCGGGGTTTTT < 2:17839/99‑1 AACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGCTCCGGCGGGGTTTTTT > 1:341772/1‑88 AACGCCTTATCTGGCCTGCAAAAAATAGCAATACCGTAATCAGGCATAATCTGCAGATACAAAAAACCCCGCTCCGGCGGGGTTTTTT < 2:341772/88‑1 ||||||||||||||||||||||||||||||||||||||||||| AGATGCGGCGTGAACGCCTTATCTGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_KO_pgi/501474‑501446‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAACCCCGCTCCGGCGGGGTTTTTT > NC_000913_3_KO_pgi/2282818‑2282845 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |