New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_KO_pgi 1552249 =NA (NA)5 (0.110) 5/262 6.4 NA noncoding (1/97 nt) RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913_3_KO_pgi 1552279 = NA (NA)noncoding (31/97 nt) RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.

AAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTT  >  NC_000913_3_KO_pgi/1552104‑1552397
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aaaaCCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCg                                                                                                                                                   >  1:517240/1‑149 (MQ=255)
        ccAAAACCAATAAATCGAAGGGAACGTGTAGGCCTGATAAGCGGAGCGCGGCAGGCAATGTTTCGTTTGTCATCAGCTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATgcggc                                                                                                                                           <  1:56131/148‑1 (MQ=21)
          aaaTCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGt                                                                                                                                         >  2:288185/1‑149 (MQ=255)
          aaaTCCAATAGATGGCAGTGAACGGGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGATAACGTAGGCTTTGTTCATGCCGGATGCGGCGt                                                                                                                                         <  2:592538/149‑1 (MQ=255)
              ccAAGATATTGTGGTGAACGTGTAGGATTGATAAGGGGAGGGCATCAGGCAATGTTGCGTTTGTCATCAGTTGAAAATGGCGCTGTAAAAGGCGTCATTTTCATATGGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAAc                                                                                                                                     <  2:594141/149‑1 (MQ=18)
                     aTTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGGTTTAAATGGCGCTGTAAAAGGCGTCATTTTGATATTGTAGACAACGTAGGCTTAGTTGATGCCGGATGCCGCGTGAGCCGCTTAt                                                                                                                              >  1:33185/1‑149 (MQ=21)
                         gaGTGAAGGAGGAGGCCTAATAAGCGGAGGGAATCAGGCAATGTTGCGTTTGTCATAAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCgg                                                                                                                          <  2:246706/148‑1 (MQ=18)
                          aGTGAACGTGTAGGCCTGATAAGCGTAGCGCAGCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGc                                                                                                                         >  2:354180/1‑149 (MQ=255)
                                  tgtAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAAc                                                                                                                 >  1:285134/1‑149 (MQ=255)
                                    tAGGCCTGAGAAGCGTAGCGCATCAGGCAATGTTGCTTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAAccc                                                                                                               <  1:905820/149‑1 (MQ=255)
                                        ccTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCa                                                                                                           >  1:91458/1‑149 (MQ=255)
                                          tGATAAGGGTAGCGCATCAGGCAATGTTTCTTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCaaa                                                                                                         <  2:436263/149‑1 (MQ=255)
                                          tGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCaaa                                                                                                         <  1:288185/149‑1 (MQ=255)
                                          tGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCaaa                                                                                                         <  1:802813/149‑1 (MQ=255)
                                                gCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAAt                                                                                                   <  1:155370/149‑1 (MQ=255)
                                                 cGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGAAAACGTAGGCGTTGTTCATGCCGGATGCGGCGTTCACGCCTTATCCGGCATGACAACCCTTCAAATCCCATa                                                                                                  >  2:844171/1‑149 (MQ=18)
                                                             ggCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTCTCCGTCCTGAAAACCCTTCAAATCCAATAGATTACAGTGaa                                                                                      >  2:234339/1‑149 (MQ=255)
                                                             ggCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGaa                                                                                      <  2:517240/149‑1 (MQ=255)
                                                              gCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAAc                                                                                     >  2:582666/1‑149 (MQ=255)
                                                                 aTGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACgtg                                                                                  <  1:354180/149‑1 (MQ=255)
                                                                                ataGTTTAAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTGTCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCg                                                                   <  1:320955/147‑1 (MQ=16)
                                                                                 caGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATgcggc                                                                                                                                           >  1:682511/1‑76 (MQ=255)
                                                                                 caGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATgcggc                                                                                                                                           <  2:682511/76‑1 (MQ=255)
                                                                                    tttCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATTGGCGTGgc                                                               >  1:801381/1‑149 (MQ=255)
                                                                                         aaTGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGGAGTGAACGTGTAGGCCTGATAAGCGTAGAGCATc                                                          >  1:52391/1‑149 (MQ=17)
                                                                                          aTGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTGGGGTTTGTTCATGCCGGATGCGGCGTGAACGCCTTGTCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGACCGTGTAGGCCTGGTAAGCGAAGCGCATCa                                                         >  1:76861/1‑149 (MQ=11)
                                                                                          aTGGCGCTGTAAAAGGCGTCATTTACATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCa                                                         >  1:784144/1‑149 (MQ=17)
                                                                                               gcTGTAAAAGGCCTCATTTTCATATTCTAGACAACGTAGGCTTTGTTCCTGCCAGATTCTGCGAGAACGCCTTATGCGGCATGAAAACCCTGCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTTATACACATCGCGCATCaaccaa                                                    >  2:388917/1‑144 (MQ=11)
                                                                                                gtGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAt                                                   <  2:263594/148‑1 (MQ=17)
                                                                                                      aaGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATGAGCGTAGCGCATCAGGCAATGTGGCg                                             >  2:881422/1‑149 (MQ=17)
                                                                                                           gTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGt                                        <  1:124515/149‑1 (MQ=31)
                                                                                                                         gTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAAt                          <  2:118761/149‑1 (MQ=34)
                                                                                                                             aCAACGTAGGTTTTGTTCATGCCGGATGCGGCGTTAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGgcg                      <  1:551704/149‑1 (MQ=25)
                                                                                                                             aCAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTAATCAGTTCTAAATGgcg                      >  2:610450/1‑149 (MQ=21)
                                                                                                                             aCAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGAATCAGGCAATGTTGCGTTTGTACTCAGTTCTAAATGgcg                      >  2:801148/1‑149 (MQ=255)
                                                                                                                              cAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGgcgc                     >  1:107196/1‑149 (MQ=34)
                                                                                                                                aCGTAGGCTTGGTTCATGCCGGATGGGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCtt                   <  2:621614/149‑1 (MQ=255)
                                                                                                                                aCGTAAGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCtt                   <  2:621186/149‑1 (MQ=37)
                                                                                                                                    aGGCTTCGTTCATGCCTGATGCGGCGTGATCGCCTTATCCGGCATGAAAACCCTTCAAAGCCAATAGATTGCAGGGAACGGGGAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTtata               <  2:509200/149‑1 (MQ=11)
                                                                                                                                       cTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGGTTGTCATCCGTTCTAAATGGCGCtttcttaat            >  2:212471/1‑143 (MQ=255)
                                                                                                                                            ttCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCa       <  2:792656/149‑1 (MQ=255)
                                                                                                                                             tgaTGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCACTTTATAAAGCGCCAt      <  2:669327/147‑1 (MQ=255)
                                                                                                                                                 gCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCAttttt  >  2:194956/1‑149 (MQ=255)
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AAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTT  >  NC_000913_3_KO_pgi/1552104‑1552397

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.