BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913_3_pae_pgi	3,440,077	Δ11 bp	coding (943‑953/990 nt)	rpoA ←	RNA polymerase, alpha subunit

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913_3_pae_pgi	3440077	3440087	11	101 [0]	[0] 103	rpoA	RNA polymerase, alpha subunit

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 3440076	0 (0.000)	95 (0.910)	75/268	0.4	100%	coding (954/990 nt)	rpoA	RNA polymerase, alpha subunit
*	?	NC_000913_3_pae_pgi	3440088 =	0 (0.000)	95 (0.910)	75/268	0.4	100%	coding (942/990 nt)	rpoA	RNA polymerase, alpha subunit

Only 100 of 101 total aligned reads displayed.

CCATATTGCGGAACATAGCCTGGCGATGGCTGCTGTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCAGGCGCATGCCCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGATCACCGATATAGTGGATAGCTTCTGCTTTAAGGCA  >  NC_000913_3_pae_pgi/3439927‑3440225

ccATATTGCGGAACATAGCCTGGCGATGGCTGCTGTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCC                                                                                                                                                       >  4:713853‑M1/1‑150 (MQ=255)

  atatTGCGGAACATAGCCTGGCGATGGCTGCTGTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCca                                                                                                                                                     <  1:1068552‑M1/150‑3 (MQ=255)

   tatTGCGGAACATAGCCTGGCGATGGCTGCTGTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcag                                                                                                                                                    >  2:533753‑M1/1‑147 (MQ=255)

    atTGCGGAACATAGCCTGGCGATGGCTGCTGTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcaga                                                                                                                                                   <  4:718152‑M1/150‑5 (MQ=255)

    atTGCGGAACATAGCCTGGCGATGGCTGCTGTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcaga                                                                                                                                                   <  3:143782‑M1/150‑5 (MQ=255)

        cGGAACATAGCCTGGCGATGGCTGCTGTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagaca                                                                                                                                               >  4:14283‑M1/1‑142 (MQ=255)

         ggAACATAGCCTGGCGATGGCTGCTGTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacag                                                                                                                                              <  1:1145611‑M1/150‑10 (MQ=255)

         ggAACATAGCCTGGCGATGGCTGCTGTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacag                                                                                                                                              >  3:46939‑M1/1‑141 (MQ=255)

          gAACATAGCCTGGCGATGGCTGCTGTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagt                                                                                                                                             >  3:469428‑M1/1‑140 (MQ=255)

               tAGCCTGGCGATGGCTGCTGTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacg                                                                                                                                        >  1:511340‑M1/1‑135 (MQ=255)

                aGCCTGGCGATGGCTGCTGTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgg                                                                                                                                       <  3:14283‑M1/150‑17 (MQ=255)

                  ccTGGCGATGGCTGCTGTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacggga                                                                                                                                     >  2:165079‑M1/1‑132 (MQ=255)

                   cTGGCGATGGCTGCTGTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTCATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaa                                                                                                                                    >  4:567532‑M1/1‑131 (MQ=255)

                     ggCGATGGCTGCTGTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTGCTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagc                                                                                                                                  <  3:621307‑M1/150‑22 (MQ=255)

                      gCGATGGCTGCTGTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagcc                                                                                                                                 >  4:161418‑M1/1‑128 (MQ=255)

                       ggaTGGCTGCTGTTGCGGTTCAGTTGACGACCACTCTTACGATGGGGCATGACCTTATCCGTCTCAGTAAAACCTTAGCCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagactgtccacgggaagcca                                                                                                                                <  2:962721‑M1/149‑24 (MQ=255)

                         aTGGGTGCTGTTGCGGTTCAGTTGACTATCACTCTTACGACGGCGCCTGACCTTATCCTTCTGTGTAAAACCCTAACCTGTCATCCGGCTCCTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacattccacgggaagccagc                                                                                                                              <  2:722012‑M1/150‑26 (MQ=255)

                         aTGGCTGCTGTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATACTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagc                                                                                                                              <  2:48351‑M1/150‑26 (MQ=255)

                             ctgctgTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgt                                                                                                                          <  1:533753‑M1/150‑30 (MQ=255)

                               gctgTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtct                                                                                                                        <  3:658830‑M1/150‑32 (MQ=255)

                                  gTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtcttta                                                                                                                     <  4:576837‑M1/150‑35 (MQ=255)

                                   ttGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaa                                                                                                                    >  4:350595‑M1/1‑115 (MQ=255)

                                    tGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGGGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaat                                                                                                                   <  1:1159008‑M1/150‑37 (MQ=255)

                                              ttGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaaga                                                                                                         <  1:336884‑M1/150‑47 (MQ=255)

                                              ttGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaaga                                                                                                         <  4:469428‑M1/150‑47 (MQ=255)

                                                 acgacCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAAGCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagat                                                                                                      >  4:517788‑M1/1‑101 (MQ=255)

                                                 acgacCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgg                                                                                                                                       <  4:119372‑M1/117‑17 (MQ=255)

                                                 acgacCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgg                                                                                                                                       >  3:119372‑M1/1‑101 (MQ=255)

                                                   gacCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagcctgcacgtctttaatctcagtaagagattt                                                                                                    >  4:670505‑M1/1‑99 (MQ=255)

                                                     ccACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttt                                                                                                  >  2:1111139‑M1/1‑97 (MQ=255)

                                                       aCTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagatttttta                                                                                                <  1:694975‑M1/150‑56 (MQ=255)

                                                         tctTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttacc                                                                                              >  4:84436‑M1/1‑93 (MQ=255)

                                                         tctTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttacc                                                                                              >  1:199861‑M1/1‑93 (MQ=255)

                                                                aTGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggtta                                                                                       <  1:753348‑M1/150‑65 (MQ=255)

                                                                  ggCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttagg                                                                                     >  1:217834‑M1/1‑84 (MQ=255)

                                                                     gcATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgt                                                                                  >  2:554699‑M1/1‑81 (MQ=255)

                                                                     gcATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgt                                                                                  >  2:1150385‑M1/1‑81 (MQ=255)

                                                                       aTGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttt                                                                                >  1:758065‑M1/1‑79 (MQ=255)

                                                                       aTGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttt                                                                                >  1:423672‑M1/1‑79 (MQ=255)

                                                                         gACCTTATCCTTGTCAGGATATCCTTATCGTGTGATCCGGTTACTCGTGAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagactgtccacgggtagcctgcacgtttttgatttcagtaagagattttttaccaaggttaggcggttta                                                                              <  2:397655‑M1/150‑74 (MQ=255)

                                                                          ccctTATCCTTCTCAGTAAAACCTTACCCGGTGATCGGGTTCCTCGTCAGGGAGGCTTGCGGGTGGCCGGTTTTCCcagagaaagtccacgggagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaag                                                                             <  2:1085431‑M1/149‑75 (MQ=255)

                                                                           cattatCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaag                                                                            <  1:831872‑M1/148‑76 (MQ=255)

                                                                             ttATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacag                                                                                                                                              >  1:47834‑M1/1‑73 (MQ=255)

                                                                             ttATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacag                                                                                                                                              <  2:47834‑M1/82‑10 (MQ=255)

                                                                                 ccTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctc                                                                      >  2:230265‑M1/1‑69 (MQ=255)

                                                                                  cTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctca                                                                     >  1:985828‑M1/1‑68 (MQ=255)

                                                                                  cTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgtt                                                                                 >  4:613165‑M1/1‑68 (MQ=255)

                                                                                  cTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgtt                                                                                 <  3:613165‑M1/138‑71 (MQ=255)

                                                                                        aGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcg                                                               >  2:186632‑M1/1‑62 (MQ=255)

                                                                                          tAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggt                                                             >  3:215538‑M1/1‑60 (MQ=255)

                                                                                          tAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggt                                                             >  4:433936‑M1/1‑60 (MQ=255)

                                                                                           aaaaCCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctca                                                                                                               <  2:1033918‑M1/99‑41 (MQ=255)

                                                                                           aaaaCCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctca                                                                                                               >  1:1033918‑M1/1‑59 (MQ=255)

                                                                                            aaaCCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtac                                                           >  4:228415‑M1/1‑58 (MQ=255)

                                                                                               ccTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgct                                                        >  1:263447‑M1/1‑55 (MQ=255)

                                                                                                cTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaac                                                                   <  2:809262‑M1/138‑85 (MQ=255)

                                                                                                cTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaac                                                                   >  1:809262‑M1/1‑54 (MQ=255)

                                                                                                 ttAACCTGTGATCCGGTTACTCGCCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgt                                                      <  1:119970‑M1/150‑98 (MQ=255)

                                                                                                   aaCCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtac                                                    <  3:84436‑M1/150‑100 (MQ=255)

                                                                                                    aCCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatc                                                                                                                  <  1:126560‑M1/87‑38 (MQ=255)

                                                                                                    aCCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatc                                                                                                                  >  2:126560‑M1/1‑50 (MQ=255)

                                                                                                     ccTGCGATCCGGTCACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtattcaatctccgtaagagactttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtacca                                                  <  2:1002453‑M1/150‑102 (MQ=255)

                                                                                                       tgtgATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccaga                                                >  2:16581‑M1/1‑47 (MQ=255)

                                                                                                       tgtgATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccaga                                                >  1:796489‑M1/1‑47 (MQ=255)

                                                                                                        gtgATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagat                                               >  1:55783‑M1/1‑46 (MQ=255)

                                                                                                         tgATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatc                                              <  3:567532‑M1/150‑106 (MQ=255)

                                                                                                           aTCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcac                                            <  3:131420‑M1/150‑108 (MQ=255)

                                                                                                           aTCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcac                                            >  3:504789‑M1/1‑43 (MQ=255)

                                                                                                               ggTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagcctgcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgat                                        <  3:670505‑M1/150‑112 (MQ=255)

                                                                                                                     tCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtg                                  <  2:146481‑M1/150‑118 (MQ=255)

                                                                                                                     tCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtg                                  >  3:287109‑M1/1‑33 (MQ=255)

                                                                                                                     tCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtg                                  >  3:287096‑M1/1‑33 (MQ=255)

                                                                                                                      cGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtgg                                 <  1:1178689‑M1/150‑119 (MQ=255)

                                                                                                                       gTCAGCGATGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtgga                                >  2:1013238‑M1/1‑31 (MQ=255)

                                                                                                                            cGATGCTTGCCGGTGGCCAGTTTTCCctgagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtggatagct                           >  2:36244‑M1/1‑26 (MQ=255)

                                                                                                                               tGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtggatagcttct                        <  1:635238‑M1/150‑128 (MQ=255)

                                                                                                                               tGCTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtggatagcttct                        <  4:134986‑M1/150‑128 (MQ=255)

                                                                                                                                 cTTGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtggatagcttctgc                      >  1:1150115‑M1/1‑21 (MQ=255)

                                                                                                                                   tGCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtggatagcttctgctt                    <  2:758065‑M1/150‑132 (MQ=255)

                                                                                                                                    gCCGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtggatagcttctgcttt                   <  3:675440‑M1/150‑133 (MQ=255)

                                                                                                                                     ccGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtaagctgtaccagatcaccgatatagtggatagcttctgcttta                  >  2:218015‑M1/1‑17 (MQ=255)

                                                                                                                                     ccGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatct                                                                                                                 <  3:239796‑M1/55‑39 (MQ=255)

                                                                                                                                     ccGGTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatct                                                                                                                 >  4:239796‑M1/1‑17 (MQ=255)

                                                                                                                                       ggTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtggatagcttctgctttaag                <  3:350595‑M1/150‑136 (MQ=255)

                                                                                                                                        gTGGCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtggatagcttctgctttaagg               <  4:46939‑M1/150‑137 (MQ=255)

                                                                                                                                          ggCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtggatagcttctgctttaaggca             <  3:698444‑M1/150‑139 (MQ=255)

                                                                                                                                          ggCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtggatagcttctgctttaaggca             <  3:161418‑M1/150‑139 (MQ=255)

                                                                                                                                           gCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtggatagcttctgctttaaggcag            <  1:473280‑M1/150‑140 (MQ=255)

                                                                                                                                           gCCAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtggatagcttctgctttaaggcag            <  2:263447‑M1/150‑140 (MQ=255)

                                                                                                                                            ccAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtggatagcttctgctttaaggcagt           >  1:798025‑M1/1‑10 (MQ=255)

                                                                                                                                            ccAGTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggtgaggcgttttaaggaggtcaacctcggtacgctgtaccagatcaccgatatagtcgaaagcttccgctttaaggcaga           >  4:682542‑M1/1‑10 (MQ=255)

                                                                                                                                               gTTTTCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtggatagcttctgctttaaggcagttag        <  4:504789‑M1/150‑144 (MQ=255)

                                                                                                                                                ttttCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctg                                                       >  4:422002‑M1/1‑6 (MQ=255)

                                                                                                                                                ttttCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctg                                                       <  3:422002‑M1/102‑97 (MQ=255)

                                                                                                                                                 tttCCcagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtggatagcttctgctttaaggcagttagca      <  4:215538‑M1/150‑146 (MQ=255)

                                                                                                                                                     ccagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtggatagcttctgctttaaggcagttagcagagc  >  2:1011919‑M1/1‑1 (MQ=255)

                                                                                                                                                     ccagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtggatagcttctgctttaaggcagttagcagagc  >  1:132073‑M1/1‑1 (MQ=255)

                                                                                                                                                     ccagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtggatagcttctgctttaaggcagttagcagagc  <  1:1111139‑M1/150‑150 (MQ=255)

                                                                                                                                                     ccagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtgga                                >  2:1060280‑M1/1‑1 (MQ=255)

                                                                                                                                                     ccagagacagtccacgggaagccagcacgtctttaatctcagtaagagattttttaccaaggttaggcgttttaaggagctcaacctcggtacgctgtaccagatcaccgatatagtgga                                <  1:1060280‑M1/120‑120 (MQ=255)

CCATATTGCGGAACATAGCCTGGCGATGGCTGCTGTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCAGGCGCATGCCCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGATCACCGATATAGTGGATAGCTTCTGCTTTAAGGCA  >  NC_000913_3_pae_pgi/3439927‑3440225

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`