| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | = 1207805 | 9 (0.200) | 34 (0.830) | 30/254 | 0.4 | 80.0% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_pae_pgi | = 1209602 | 9 (0.220) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
CACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCG > NC_000913_3_pae_pgi/1209454‑1209747 | cccGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCagag < 2:339634/147‑1 (MQ=255)cacGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCagag < 2:231632/149‑1 (MQ=255) atgtaGATCAGGCAATTTATTTGTTGTATAAGCGTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAATAGGTAATGCAGAGc > 2:408482‑M2/3‑148 (MQ=255) aaTCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGTAACAGGGACACCAACGGGTAATGCAAATccttct < 2:758314‑M2/149‑7 (MQ=255) aaTCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGACCCAGTTATTCTTCAGCAGAAAAAGCTTCACCATTGCATTTCATCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGACCCGGGACACCAGCAGGTAAGGCACAAccttcc < 2:86181‑M2/149‑7 (MQ=255) tCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcc > 2:581996‑M2/1‑141 (MQ=255) tCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcc > 2:382593‑M2/1‑141 (MQ=255) ggCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaa < 2:624249‑M2/149‑12 (MQ=255) gCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAACGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGACccttatcccaac < 2:8320‑M2/149‑13 (MQ=255) gCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGAGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCGTGTTGGCGGGGTGGCTGAAGGCCACGGAAACTGGACACCAACAGGGAATGCACAGccttctcccaaa < 2:8567‑M2/149‑13 (MQ=255) atttatttGTCGGATAAGCCTTTGCCAGATCCGGGTATTCTTCAGCAGAAAAAGCGACACCATAACATTTCGGCCGGCCTGTTGGCGGAGTCCCTCATTGCGACGTAACGGGGACACCAACAGGTAATGCAGAGCCCTCTCCCAAACCa > 2:769790/1‑149 (MQ=255) tttatttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGGAGAGGGATGGCAACAGGTAATGCAGAGccttctcccaaaccaa > 1:186365‑M2/1‑133 (MQ=255) gTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTACATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCCCGGAAACGGGACACCAACAGGTAATGCAGAGccttctcccaaaccacggttttc < 1:404205‑M2/149‑24 (MQ=255) cGGATAAGCCTTTGCCAGTTCCGGTTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACTGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGa < 1:121459/149‑1 (MQ=255) aTAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAGTTTGCGCCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagag > 1:543639‑M2/1‑121 (MQ=255) aaGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCAGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACAGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagcc < 1:338543‑M2/149‑31 (MQ=255) gCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgt > 1:683743‑M2/1‑117 (MQ=255) gCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCACCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATCCAGAGccttctcccaacccacggttttagagagccgt < 2:648481‑M2/149‑33 (MQ=255) tttGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAACGCCACGGAACCGGGACACCACCAGCTAATGCAGAGCCTTATCCCACACCCACGTTTATGCAAATggcgcc > 2:783588/1‑144 (MQ=255) ccAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcga < 1:536996‑M2/135‑26 (MQ=255) ccAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcga > 2:536996‑M2/1‑110 (MQ=255) ttCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTAGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCCAAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgc < 2:302860‑M2/149‑44 (MQ=255) ttCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCAAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgc < 1:647032‑M2/149‑44 (MQ=255) cGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGAGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccat < 2:786727‑M2/149‑47 (MQ=255) ggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGAGGCTGAAGGCCACGGAACCGGGACAACAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgaaaaccgtttgcacagtgccagcc < 1:579182‑M2/149‑49 (MQ=255) gcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatc > 1:764182‑M2/1‑90 (MQ=255) aaaaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt < 2:402658/149‑1 (MQ=255) aaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaa < 1:145121‑M2/149‑66 (MQ=255) cGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaatcaaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacgga > 1:150544‑M2/1‑80 (MQ=255) ggCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatt < 1:779029‑M2/131‑53 (MQ=255) ggCACCATAGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatt > 2:779029‑M2/1‑79 (MQ=255) aCCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAGTGAAGAGccttctcccaaaccaaggttttcgagacccgtttgcacagtgccatccgatttgctctagcccaacgcgtact < 2:138192‑M2/149‑74 (MQ=255) agtgcATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgagagcgccaaacggattcttgc > 1:8320‑M2/3‑73 (MQ=255) aTTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgatagccgtttgcacagtgccagccgatttgatatcgccaaacggattcttgc > 1:8567‑M2/1‑73 (MQ=255) ccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagtgccgtttgcacattgccatccgatttgatatcgccaaacggattcttgcggcttaacagca > 1:150055‑M2/1‑61 (MQ=255) cagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggactcttgcggcttaaaagccg < 2:717759‑M2/149‑90 (MQ=255) cTGTTGGCGGAGTGGCTGAAGGCAACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAATAAATAACAAGTAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg < 1:318758/149‑1 (MQ=255) ttGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcattctcccaaaccaaggttttcgaaagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggctttacagcagcgcgcga < 1:342578‑M2/149‑97 (MQ=255) gCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttatcccaaaccaaggttttcgagagccggttgcatagtgcaatcctatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagt > 1:302860‑M2/1‑50 (MQ=255) gCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGt > 1:6400/1‑149 (MQ=255) tgagggctgaAGGCCACGGAACCGGAACACCAAAAGGTAATGCAGAGccttctcccaaaccaatgttttcgagagccgtttgcacagtcccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcg > 2:307593‑M2/5‑47 (MQ=255) aGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgtgagccgtttgcactgtgtcatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcgg > 1:100672‑M2/1‑46 (MQ=255) cGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgt < 2:595335‑M2/149‑119 (MQ=255) cGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGCTTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc < 2:6400/149‑1 (MQ=255) cGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgatagccgattgcacaatgccatccgatttgatatcgccaaacggaatcttgcggcttaacatcagcgcgcgaagtgcggtaagtaactggtcgtgccccc < 1:546301‑M2/149‑125 (MQ=255) cGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagaaccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtccggtaagtaactggtcgtgccgcc < 1:541780‑M2/149‑125 (MQ=255) gACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaccggattcttgaggcttaacagcagcgcgccaagtgcagtaagtaactagtcctgccgcccct < 2:115942‑M2/149‑128 (MQ=255) cAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagccgcgcgcgaagtgcggtaagtaactggtcgtgccgccccctcccc < 2:199096‑M2/149‑133 (MQ=255) cAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctcc < 1:597299‑M2/149‑133 (MQ=255) cAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCt > 1:556259/1‑149 (MQ=255) aaCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctcca < 2:98573‑M2/149‑134 (MQ=255) aCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatacgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtacgtaactggtcgtgccgccccttctccag < 1:167317‑M2/149‑135 (MQ=255) aTGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAAGGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTaa < 1:139534/149‑1 (MQ=255) tGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtccggtaagtaactggtcgtgccgccccttctcccggctggcac < 2:291178‑M2/149‑143 (MQ=255) agagCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTaactcc > 2:192640/1‑145 (MQ=255) | CACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCG > NC_000913_3_pae_pgi/1209454‑1209747 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |