Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913_3_pae_pgi	1528427–1529174	1529214	41–788	17 [16]	[16] 18	rhsE	pseudogene, Rhs family

AGAGCCAGCACCTGAACAGCCTGGTGTATGACCGTGACTACGGGTGGAATGACAACGGCGACCTGGTGCGCATCAGCGGCCCGCGACAGACGCGGGAATACGGCTACAGCGCCACGGGCAGGCTGGAGAGTGTGCGCACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGG  >  NC_000913_3_pae_pgi/1528278‑1528467                                                                                                                                                     |                                          agagCCAGCACGTGAACAGCCTGGTGTAGGACCGTGACGACGGGTGGAATGACAACGGCGACCTGGTGCGCATCAGCGGCCCGCGACAGACGCGGGAATACGGCTACAGCGCCACGGGCAGGCTGGAGAGTGTGCGCACCCTCGCACCa                                           <  1:699888/149‑1 (MQ=255)       agaaCCTGAACAGCCTGGGGTAGGAGCGTGAATCGGGGTGGCATGACAACGGCGACCTGGTGCGCATCAGCGGCCCGCGACCGACGCGGGAATACGGCTACAGCGCCACGGGAAGGCTGGAGAGTGTGTGCACCCTCGCACCAGACCTg                                     <  2:289586/146‑1 (MQ=11)       aGCACCTGAACAGCATGGTGTATGACCGTGACTACGGGTGGAATGACAACGGCGACCTGGTGCGCATCAGCGGCCCGCGACAGACGCGGGAATACGGCTACAGCGCCACGGGCAGGCTGGAGAGTGTGCGCACCCTCGCACCAGACCTg                                     <  2:391982/149‑1 (MQ=21)          acccgcaCAGCCTGGTGTATGACCGTGACTACGGGTGGAATGACAACGGCGACCTGGTGCGCATCAGCGGCCCGCGACAGACGCGGGAATACGGCTACAGCGCCACGGGCAGGCTGGAGAGTGTGCGCACCCTCGCACCAGACCTGGAc                                  <  2:599215/143‑1 (MQ=21)          aCCTGAACAGCCTGGTGTATGACCGTGACTACGGGTGGAATGACAACGGCGACCTGGTGCGCATCAGCGGCCCGCGACAGACGCGGGAATACGGCTACAGCGCCACGGGCAGGCTGGAGAGTGTGCGCACCCTCGCACCAGACCTGGAc                                  <  1:530418/149‑1 (MQ=35)          aCCTGAACAGCCTGGTGTATGACCGTGACTACGGGTGGAATGACAACGGCGACCTGGTGCGCATCAGCGGCCCGCGACAGACGCGGGAATACGGCTACAGCGCCACGGGCAGGCTGGAGAGTGTGCGCACCCTCGCACCAGACCTGGAc                                  >  2:642894/1‑149 (MQ=35)           ccTGAACAGCCTGGTGTATGACCGTGACTACGGGTGGAATGACAACGGCGACCTGGTGCGCATCAGCGGCCCGCGACAGACGCGGGAATACGGCTACAGCGCCACGGGCAGGCTGGAGAGTGTGCGCACCATCGCACCAGCCCTGGACa                                 >  2:156803/1‑149 (MQ=25)              gAACAGCCTGGTGTATGACAGTGACTACGGGTGGAATGACAACGGCGACCAGGTGCGCATCAGCGGCCCGCGACCGAAGCCGGGATAAGCCTGCAGCGCCACCCGCAGGCGGGAGAGGAGGCCGACCCCGCCACCAGACATGGaacacc                              >  2:40965/1‑144 (MQ=2)              gAACAGCATGGTGTATGACCGTGAGTATGTGGGGAATGTTATCGTCGACCTGGTTGGTGTCGGCGGCCCGCGGCAGGCGCGGGAATACGGCTACAGCGCCACGGGCAGGCTGGAGAGTGTGCGCACCCTCGCACCAGACCTGGACATcc                              >  2:794213/1‑149 (MQ=11)                      tGGTGTATGACCGTGACTACGGGTGGAATGACAACGGCGACCTGGTGCGCATCAGCGGCCCGCGACAGACGCGGGAATACGGCTACAGCGCCACGGGCAGGCTGGAGAGTGTGCGCACCCTCGCACCAGACCTGGGCATCCGCATCCCg                      >  1:346905/1‑149 (MQ=25)                       ggTGTATGACCGTGACTACGGGTGGAATGACAACGGCGACCTGGTGCGCATCAGCGGCCCGCGACAGACGCGGGGATACGGCTACAGCGCCACGGGCAGGCTGGAGAGTGTGCGCACCCTCGCCACAGACCTGGACATGCGCCTCCCgc                     >  2:558168/1‑148 (MQ=11)                        gtgtATGACCGTGACTACGGGTGGAATGACAACGGCGACCTGGTGCGCATCAGCGGCCCGCGACAGACGCGGGAATACGGCTACAGCGCCACTGGCAGGCTGGAGAGTGTGCGCACCCACGCACCAGACCTGGACATCCGCATCCCGTa                    <  1:289851/149‑1 (MQ=21)                        gtgtATCACCGTGACTACGGGTGGACTGACAACGGCGACCTGGTGCGCATCAGCGGCCCGCGACCGACGCGGGAATACGGCTCCAGCGCTACGGGCAGGCTGGAGAGTGTGCGCACCCTCGCACCAGACCTGGACATCCGCATCCCGTa                    <  1:723885/149‑1 (MQ=11)                          gtATGACCGTGACTAGGGGTGGAATGACAACGGCGACCTGGTGCGCATCAGCGGCCCGCGACAGACGCGGGAATACGGCTACAGCGCCACGGGCAGTTTTGAGAGTGTGCGCACCCTCGCACCAGACCTGGACATCCGCATCCCGTATg                  <  1:334507/149‑1 (MQ=255)                               aCCGTGACTACGGGTGGAATGACAACGGCGACCTGGTGCGCATCAGCGGCCCGCGACAGACGCGGGAATACGGCTACAGCGCCACGGGCAGGCTGGAGAGTGTGCGCACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACg             >  1:447906/1‑149 (MQ=32)                                       tACGGGTGGAATGACAACGGCGACCTGGTGCGCATCAGCGGCCCGCGACAGACGCGGGAATACGGCTACAGCGCCACGGGCAGGCTGGAGAGTGTGCGCACCCTCGCACCGGACCTGGACATCCGCATCCCGTATGCCACGGACCcggc     >  2:646996/1‑149 (MQ=17)                                          gggTGGAATGACAACGGCGACCTGGTGCGCATCAGCGGCCCGCGACAGACGCGGGAATACGGATACAGCGCCACGGGCAGGCTGGAGAGTGTGCGCACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCggg  <  2:93398/149‑1 (MQ=17)                                                                                                                                                     |                                          AGAGCCAGCACCTGAACAGCCTGGTGTATGACCGTGACTACGGGTGGAATGACAACGGCGACCTGGTGCGCATCAGCGGCCCGCGACAGACGCGGGAATACGGCTACAGCGCCACGGGCAGGCTGGAGAGTGTGCGCACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGG  >  NC_000913_3_pae_pgi/1528278‑1528467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑