New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 1299498	0 (0.000)	69 (0.950)	55/274	0.3	100%	intergenic (+253/‑1684)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
	?	NC_000913_3_pae_pgi	1300698 =	0 (0.000)					intergenic (+1453/‑484)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

TTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCC  >  NC_000913_3_pae_pgi/1299351‑1299645                                                                                                                                                    |                                                                                                                                                    ttctCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGGAGAGGAAAGTGCTAAa                                                                                                                                                    >  1:473115‑M1/1‑148 (MQ=255)    tcAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataa                                                                                                                                                 <  1:744978‑M1/149‑5 (MQ=255)    tcAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTAAGCCACATACGATTCCTGGGCTCTCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTGTGGTATGTGAAAGTGATAAataa                                                                                                                                                 >  2:1193120‑M1/1‑145 (MQ=255)        aTTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataat                                                                                                                                             <  1:543220‑M1/149‑9 (MQ=255)        aTTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataat                                                                                                                                             <  1:542141‑M1/149‑9 (MQ=255)                   ttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTACTTCCACTACCTTTGGTAGAGCGAAATGTGAAataataatcatatgttaat                                                                                                                                  >  2:820904‑M1/1‑130 (MQ=255)                   ttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaa                                                                                                                                  >  2:1019612‑M1/1‑130 (MQ=255)                      taAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaatta                                                                                                                               >  2:865271‑M1/1‑127 (MQ=255)                            tttCCGTAAGTTCTTCTCCTCACCCTTATGTTATTTTCTCCACATCATAATCCTGGTCTTGCTGAAGAATAATTGAAATTATATTATTAATTCCACTGCGTTTAGTAGAGTAAAGTTCTAAataataatcaattgttaaattattgtgc                                                                                                                         <  2:123732‑M1/149‑29 (MQ=255)                                 ttAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttc                                                                                                                    >  2:1053528‑M1/1‑116 (MQ=255)                                    aCTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcact                                                                                                                 >  1:519040‑M1/1‑113 (MQ=255)                                       gCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactact                                                                                                              >  2:807049‑M1/1‑110 (MQ=255)                                        gttttcctctgcaTCATGTTATTTTGGGCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactg                                                                                                             <  2:300725‑M1/145‑41 (MQ=255)                                              ctcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactg                                                                                                       >  1:905385‑M1/1‑103 (MQ=255)                                               tcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgt                                                                                                      <  2:1262015‑M1/149‑48 (MQ=255)                                               tcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgt                                                                                                      <  1:1225498‑M1/149‑48 (MQ=255)                                                              tgtcgCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatag                                                                                       <  1:952924‑M1/147‑63 (MQ=255)                                                                tCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATGAAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagac                                                                                     <  1:559764‑M1/149‑65 (MQ=255)                                                                   ccACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactcctgaaactgtaatcagaaaaaatagaacag                                                                                  >  2:186238‑M1/1‑82 (MQ=255)                                                                   ccACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatg                                                                                  >  2:1301739‑M1/1‑82 (MQ=255)                                                                    cacaTCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgc                                                                                 >  1:629754‑M1/1‑81 (MQ=255)                                                                       atcatAATTCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagctagacctgctta                                                                              <  2:509020‑M1/149‑72 (MQ=255)                                                                       atcatAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgctta                                                                              >  2:1165793‑M1/1‑78 (MQ=255)                                                                         catAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagc                                                                            <  2:578824‑M1/149‑74 (MQ=255)                                                                          atAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagcc                                                                           >  1:1242417‑M1/1‑75 (MQ=255)                                                                           tAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaataaggaacgatagacatggttagcca                                                                          >  1:930087‑M1/1‑74 (MQ=255)                                                                             ctacttggcttactGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaat                                                                        <  2:847510‑M1/143‑78 (MQ=255)                                                                             aTCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaat                                                                        <  2:519040‑M1/149‑78 (MQ=255)                                                                              tCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcacttgcttctatagtttgcatttcactactgggactgtaatcagaaaagatagacctgcttagccaatc                                                                       >  1:306533‑M1/1‑71 (MQ=255)                                                                               ccTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatct                                                                      <  2:905385‑M1/149‑80 (MQ=255)                                                                                 tGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctct                                                                    >  2:761087‑M1/1‑68 (MQ=255)                                                                                 tGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCAATGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctct                                                                    >  2:313154‑M1/1‑68 (MQ=255)                                                                                      ttGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttg                                                               >  2:765574‑M1/1‑63 (MQ=255)                                                                                      ttGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaaactctatttg                                                               >  2:766737‑M1/1‑63 (MQ=255)                                                                                       tGCTGAAGAATAATTGAAATGATATTATTAATTCCTCGGCCTGTGTTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttga                                                              <  1:1019612‑M1/149‑88 (MQ=255)                                                                                          tGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctct                                                                    >  2:401502‑M1/1‑59 (MQ=255)                                                                                          tGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctct                                                                    <  1:401502‑M1/140‑82 (MQ=255)                                                                                                 taatTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaa                                                    >  1:1261219‑M1/1‑52 (MQ=255)                                                                                                     tGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagat                                                <  1:1165793‑M1/149‑102 (MQ=255)                                                                                                      gAAATGATATTATTAATTCGACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcattgcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattggattgaaagatg                                               >  2:1107873‑M1/1‑47 (MQ=255)                                                                                                      gAAATGATATTATTAATTCAACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcattacactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatg                                               >  2:1107856‑M1/1‑47 (MQ=255)                                                                                                        aaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtt                                             >  2:1100216‑M1/1‑45 (MQ=255)                                                                                                        aaTGATATGATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtt                                             <  2:1089155‑M1/149‑105 (MQ=255)                                                                                                           gATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgt                                          >  2:864509‑M1/1‑42 (MQ=255)                                                                                                              attattAATTCCAGTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaa                                       <  2:698845‑M1/149‑111 (MQ=255)                                                                                                               ttattaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaag                                      <  2:761179‑M1/149‑112 (MQ=255)                                                                                                                taataattCAACTGTCTTTGGTAGAGGAAAGGGCTAAataatcatcaagtgttaaattattgtgcatttcactactgaaactgtaatcagaaaagatagacatgcttagggaatctctatttgattgaattgaaagatgtttgttaagg                                     <  2:221824‑M1/146‑113 (MQ=255)                                                                                                                    aaTTCCACTGCCTTTGGTAGAGGAAAGAGCTAAataataatcaagtgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatg                                 <  1:693334‑M1/149‑117 (MQ=255)                                                                                                                     aTTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttagggcatgg                                >  2:114562‑M1/1‑32 (MQ=255)                                                                                                                     aTTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatgg                                >  1:978262‑M1/1‑32 (MQ=255)                                                                                                                        ccACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatg                             >  1:277780‑M1/1‑29 (MQ=255)                                                                                                                        ccACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgctt                                                                               <  1:366736‑M1/99‑71 (MQ=255)                                                                                                                        ccACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgctt                                                                               >  2:366736‑M1/1‑29 (MQ=255)                                                                                                                           atgCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaa                          <  1:346827‑M1/148‑124 (MQ=255)                                                                                                                              ccTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagct                       <  2:418063‑M1/149‑127 (MQ=255)                                                                                                                               cTTTGGTAGAGGAAAGTGCTCAataataataaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagcta                      <  1:539087‑M1/149‑128 (MQ=255)                                                                                                                                tttGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctat                     <  1:1053528‑M1/149‑129 (MQ=255)                                                                                                                                    gTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagat                 >  2:675137‑M1/1‑17 (MQ=255)                                                                                                                                      agagCAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattc               <  1:1107856‑M1/149‑135 (MQ=255)                                                                                                                                      acaggaAAGTGCTAAataataatgaatttttaaattattgtgcatttcactactggacctgtaatcagaaaagatagacatgcttaggcaatctttatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattc               <  1:1107873‑M1/147‑135 (MQ=255)                                                                                                                                         ggAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctga            <  1:1259244‑M1/149‑138 (MQ=255)                                                                                                                                          gAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaatttaaagatgtttgttaaggcatggatgcaagctatagattctgat           <  1:313154‑M1/149‑139 (MQ=255)                                                                                                                                          gAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgat           <  1:1061189‑M1/149‑139 (MQ=255)                                                                                                                                          gAAAGTGCCAAataataagcaattgtgaaattattgtgcatttcactacctgaactgtaatcagaaaagatagacatgcttatccaatctctatttgtttgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgat           <  1:127020‑M1/149‑139 (MQ=255)                                                                                                                                             aGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacg        <  1:807049‑M1/149‑142 (MQ=255)                                                                                                                                               tGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggt      <  1:864509‑M1/149‑144 (MQ=255)                                                                                                                                               tGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatag                                                                                       >  1:819752‑M1/1‑6 (MQ=255)                                                                                                                                               tGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatag                                                                                       <  2:819752‑M1/68‑63 (MQ=255)                                                                                                                                                gCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaacgatgtttgttaaggcatggttgcaagctatagattcttatacggtc     >  2:556062‑M1/1‑5 (MQ=255)                                                                                                                                                  tAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtcaa   >  1:1231170‑M1/1‑3 (MQ=255)                                                                                                                                                   aaataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtcaat  >  2:1014499‑M1/1‑2 (MQ=255)                                                                                                                                                   aaataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtcaat  <  2:966323‑M1/149‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                                    TTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCC  >  NC_000913_3_pae_pgi/1299351‑1299645

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.