New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_pgi = 28841396 (1.290)6 (0.090) 5/264 9.7 6.1% coding (750/759 nt) yagI CP4‑6 prophage; putative DNA‑binding transcriptional regulator
?NC_000913_3_pae_pgi = 288439 96 (1.380)coding (724/759 nt) yagI CP4‑6 prophage; putative DNA‑binding transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 101 total aligned reads displayed.

GGGCGCGGCTTCTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCCACACCGGCACCGCCACGCAGCGCACGCCCTGCTCGTTCTCT  >  NC_000913_3_pae_pgi/288295‑288587
                                                                                                                                                |                                                                                                                                                    
gggcgCGGCTTCTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCg                                                                                                                                                  >  2:412751/1‑149 (MQ=255)
 ggcgCGGCTTCTTCAGCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCGCCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCgg                                                                                                                                                 <  2:629196/149‑1 (MQ=255)
 ggcgCGGCTTCTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCgg                                                                                                                                                 <  2:1045965/149‑1 (MQ=255)
  gcgcGGCTTCTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTAATTAGCAAAGGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGGGCGCGAGCCCGGc                                                                                                                                                >  1:1284626/1‑149 (MQ=255)
    gcgGCTTCTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCct                                                                                                                                              >  1:1281261/1‑149 (MQ=255)
      ggCTTCTTCACCGGCGTGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCctgc                                                                                                                                            <  1:601668/149‑1 (MQ=255)
      ggCTTCTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACCTCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGACCGCGTAGCCCCGCGCGCGCGAGAGCGCGCGCCCGGCccgc                                                                                                                                            >  2:979777/1‑149 (MQ=255)
        cttcttCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGCCTTCGACTACTTCACCTACGAGCCGGTCTCACGGCTCAGGCCGGGTAACCCAGCGCGCGCGAGAGCGCGAGCCCGGCctgccg                                                                                                                                          >  1:444051/1‑147 (MQ=255)
        cttcttCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCctgctg                                                                                                                                          >  2:101902/1‑149 (MQ=255)
         ttcttcACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGa                                                                                                                                         <  2:21899/149‑1 (MQ=255)
            ttcACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAgc                                                                                                                                      >  1:838502/1‑149 (MQ=255)
               cccGGCGCGTTGTTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAgctgc                                                                                                                                   <  2:838502/148‑1 (MQ=255)
                ccGGCGCGTTTGTGGGCCTGCAATGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGACCAGCGCGGCGGAGAGGGCGACTCCGGCCTGCTGAAgctgct                                                                                                                                  >  2:238650/1‑149 (MQ=255)
                 cggcggGTTGGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTc                                                                                                                                 <  2:71799/149‑1 (MQ=255)
                   gcgcGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTcgc                                                                                                                               <  1:555334/149‑1 (MQ=255)
                      cgTTTGTGGGCCTGCACTGCGAGGACAGCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCAGGCCTGCTGAAGCTGCTCGCGGa                                                                                                                            <  2:559075/149‑1 (MQ=255)
                       gTTTGTGGGCCTGCACTGCGAGGACAGCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGGGCGAGCCCGGCCAGCGGAAACTGCCCGCggca                                                                                                                           >  1:214815/1‑147 (MQ=255)
                        tttGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGgaa                                                                                                                          >  2:462732/1‑149 (MQ=255)
                        gttGTGGGCCGGCACGGGGAGGACATCAGCGGCGGCGGCTGCTGCGCGGACTTCGACTACTTCACCTACGAGCCGGTCGAACGGCTCAGGCCGGGTAGCCGAGCGCGCGCGAGAGCGCGGGCCCGGCCTGCTGAAGCTGCTCGCGGaaa                                                                                                                          <  2:40585/148‑1 (MQ=255)
                         ttGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAAt                                                                                                                         <  2:74439/149‑1 (MQ=255)
                            tgGGCCTGCACTGCGAGGACATCAGCGGAGACGGCTGCTTGGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAg                                                                                                                      >  1:1295821/1‑149 (MQ=255)
                              cgCCTGCACTGGGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGcc                                                                                                                    <  2:788313/148‑1 (MQ=255)
                               gCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCa                                                                                                                   >  1:987785/1‑149 (MQ=255)
                                ccTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAgctgc                                                                                                                                   <  1:766175/132‑1 (MQ=255)
                                ccTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAgctgc                                                                                                                                   >  2:766175/1‑132 (MQ=255)
                                    cACTGCGAGGACATCAGCGTCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCTAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTcc                                                                                                              <  1:346018/149‑1 (MQ=255)
                                       tGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCcgcg                                                                                                           >  1:1291661/1‑149 (MQ=255)
                                         cGAGGACATGCGCGGCGACGGCTGCTACGCGGATTTCGACTACTTCAGCTACGAGCCGGTCTCACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGCGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGcgtc                                                                                                         <  2:1162422/149‑1 (MQ=255)
                                         cGAGGACATCAGGGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGcgtc                                                                                                         <  2:982832/149‑1 (MQ=255)
                                               cATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCAc                                                                                                   >  1:412370/1‑149 (MQ=255)
                                               cATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCAc                                                                                                   <  2:1008123/149‑1 (MQ=255)
                                                aTCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGATACGACCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAGATTAGCCAGCTCCGCGTCGTCCAcg                                                                                                  >  1:1288369/1‑149 (MQ=255)
                                                 tCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCAcgc                                                                                                 <  1:473704/149‑1 (MQ=255)
                                                   cgcggcgACGGCTGCCACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGACGGTGGGTGCTGAAATTAGCCAGCTCCGCGTCGTCCACGCgg                                                                                               <  1:316476/148‑1 (MQ=255)
                                                   aGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGCCGCCACGGGCCCAAATTAGCCAGCTCCGCGTCGTCCACGCgg                                                                                               <  1:975342/149‑1 (MQ=255)
                                                   aGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCgg                                                                                               <  2:1276457/149‑1 (MQ=255)
                                                    gcggcgACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCggg                                                                                              >  2:834103/1‑149 (MQ=255)
                                                    gcggcgACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCggg                                                                                              >  2:941011/1‑149 (MQ=255)
                                                      ggcgACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAg                                                                                            <  1:941011/149‑1 (MQ=255)
                                                      ggcgACGGCTGCTACGCGGACTTCGACTACTTCACCGACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAg                                                                                            <  2:1284626/149‑1 (MQ=255)
                                                       gcgACGTCGGCTACGCGGACTTCGACTACTTCACCTACGCGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAgg                                                                                           <  1:1186429/149‑1 (MQ=255)
                                                          aCGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGCGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCATGCGGGAGGTCa                                                                                        >  2:802614/1‑149 (MQ=255)
                                                               tgctCCGCGGACTCAGACTGCTCCACCTACGAGCCGGTCTAACGGCTCAGGCCGCGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTc                                                                                   <  1:238650/149‑1 (MQ=255)
                                                               tgctACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAgct                                                                                                                                     >  1:1080666/1‑99 (MQ=255)
                                                               tgctACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAgct                                                                                                                                     <  2:1080666/99‑1 (MQ=255)
                                                               tgctACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGAGTc                                                                                   >  1:470003/1‑149 (MQ=255)
                                                               tgctACGCGGACTTCGACTACTTCACCGACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTc                                                                                   <  1:495442/149‑1 (MQ=255)
                                                               tgccACGCGGACTTCGACTACTTCACCGACGACCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTc                                                                                   <  1:1002445/149‑1 (MQ=255)
                                                                gctACGCGGATGTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCg                                                                                  <  2:96623/149‑1 (MQ=255)
                                                                 ctACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGa                                                                                 <  1:524089/149‑1 (MQ=255)
                                                                     gcgGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAgg                                                                             <  1:64309/149‑1 (MQ=255)
                                                                          cgtCGACTACTTCCCCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAg                                                                        <  1:136246/147‑1 (MQ=255)
                                                                          cTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAg                                                                        >  1:10097/1‑149 (MQ=255)
                                                                              gACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAAGCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGACAGCTCCGCGTCGTCCACGCGGGGGGTCAGCGTCGACAGGCTCAGggcg                                                                    >  1:1183171/1‑149 (MQ=255)
                                                                               actactTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGggcgg                                                                   <  1:412751/149‑1 (MQ=255)
                                                                                  actTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCCCAGGgcggcgc                                                                >  2:771197/1‑148 (MQ=255)
                                                                                      cACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCCGGAGGGCAGCGTCGGCAGGAGCAGGGCGGCGATGAc                                                            >  1:830241/1‑149 (MQ=255)
                                                                                        gcTACGAGCCGGTGGGACGGTGCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCTGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGAcgc                                                          <  2:1056733/148‑1 (MQ=255)
                                                                                         cTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGCGGTCAGCGTCGACAGGCTCAGGGCGGCGGTGAcgcg                                                         >  1:171245/1‑149 (MQ=255)
                                                                                         cTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGAcgcg                                                         >  1:103989/1‑149 (MQ=255)
                                                                                         cTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGAcgcg                                                         <  2:1126008/149‑1 (MQ=255)
                                                                                         cTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGAcgcg                                                         >  1:757121/1‑149 (MQ=255)
                                                                                         cTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGGCAGCGTCGACAGGCTCAGGGCGGCGATGAcgcg                                                         >  1:554338/1‑149 (MQ=255)
                                                                                               tgcgtgcTAACGGATCAGGCCGGGGTGCCCAGGGCGCGCGAGGGCGCTAGCTCGGCCTGCGGAAGCTGCTCGCGGAAAGTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTc                                                   <  2:1237423/143‑1 (MQ=255)
                                                                                               gCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTc                                                   >  2:343221/1‑149 (MQ=255)
                                                                                                ccGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCGGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCCCAGGGCGCCGATGACGCGGGACTCg                                                  >  2:1271377/1‑149 (MQ=255)
                                                                                                ccGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGGTGACGCGGGACTCg                                                  >  1:399932/1‑149 (MQ=255)
                                                                                                 cgttCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGt                                                 <  1:756102/146‑1 (MQ=255)
                                                                                                   gTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAGTTAGCCAGCTCCGCGTCGTCCACGCGGGAGGGCAGAGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTgg                                               >  1:406219/1‑149 (MQ=255)
                                                                                                   gTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTgg                                               >  1:724534/1‑149 (MQ=255)
                                                                                                   gTCTAACGGCTCAGGCAGGGTAGCCCAGCGCGCGCGAGCGAATCATCTCTGCCTGCTGCAATGGTGAACATAAGATAACCAGCCCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGCTGACGCGGGACTCGTgg                                               >  2:1258379/1‑149 (MQ=255)
                                                                                                    tCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGAcgcg                                                         <  1:898614/138‑1 (MQ=255)
                                                                                                    tCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGAcgcg                                                         >  2:898614/1‑138 (MQ=255)
                                                                                                    tCTAACGGCTCAGGCCGGGAAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGATCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGt                                              >  2:1104467/1‑149 (MQ=255)
                                                                                                        tcGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTAGTCGACGCGGGAGGTCAGCGTCGACTGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCca                                          >  2:1208583/2‑149 (MQ=255)
                                                                                                          ggCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCTTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCcaca                                        >  2:25169/1‑149 (MQ=255)
                                                                                                           gCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCCacac                                       <  1:234808/149‑1 (MQ=255)
                                                                                                               aGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGCCGCGGGACTCGTGGGTCCACACCGGc                                   >  1:955721/1‑149 (MQ=255)
                                                                                                                ggCCGGCTAACCCATCGCGCGCGAGAGCGCGAGCCCTGCCTGCTGAAGCTGCTCGCGCAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGGCAGCGTCGACCGGCTCAGGGCGGCGATGACGCGGGACTCGTGGCTCCACACCGGcc                                  >  2:507565/1‑148 (MQ=255)
                                                                                                                 gCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGTCAGGCTCGGGGCGGCGATGACGCGGGACTCGTGGTTCCACACCGGCAc                                 >  1:762349/1‑149 (MQ=255)
                                                                                                                  ccGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCCACACCGGCGcc                                <  2:10097/149‑1 (MQ=255)
                                                                                                                      gTAGCCCAGCGCGCGCGAGAGCGTGAGCCCGTTCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCCACACCGGCACCGCCa                            <  1:19223/149‑1 (MQ=255)
                                                                                                                      gTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCCACACCGGCACCGCCa                            <  1:1300942/149‑1 (MQ=255)
                                                                                                                       tAGCCCAGCGCGCGCGAGCGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCCACACCGGCACCGCCAc                           <  2:444051/149‑1 (MQ=255)
                                                                                                                           ccAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGCCTCGTGGTTCCACACCGGCACCGCCACGCAg                       >  2:440289/1‑149 (MQ=255)
                                                                                                                           ccAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCCACACCGGCACCGCCACGCAg                       >  2:627998/1‑149 (MQ=255)
                                                                                                                            cAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTc                                                                                   <  1:196977/88‑1 (MQ=255)
                                                                                                                            cAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTc                                                                                   >  2:196977/1‑88 (MQ=255)
                                                                                                                                   cgcgAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCTTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCCACACCGGCACCGCCACGCAGCGCACGcc               <  1:25169/149‑1 (MQ=255)
                                                                                                                                    gcgAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCCACACCGGCACCGCCACGCAGCGCACGccc              >  1:222573/1‑149 (MQ=255)
                                                                                                                                      gagaGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGc                                                                                                                     >  1:389882/1‑44 (MQ=255)
                                                                                                                                      gagaGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGc                                                                                                                     <  2:389882/44‑1 (MQ=255)
                                                                                                                                      gagaGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCgg                                                                                               <  2:421812/66‑1 (MQ=255)
                                                                                                                                      gagaGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCgg                                                                                               >  1:421812/1‑66 (MQ=255)
                                                                                                                                        gagCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCCACACCGGCACCGCCACGCAGCGCACGCCCTGcc          >  2:1075935/1‑148 (MQ=255)
                                                                                                                                            gcgAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCCACACCGGCACCGCCACGCAGCGCACGCCCTGCTCGtt      <  1:755406/149‑1 (MQ=255)
                                                                                                                                            gcgAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCCACACCGGCACCGCCACGCAGCGCACGCCCTGCTCGtt      >  1:688929/1‑149 (MQ=255)
                                                                                                                                              gAGCGCGGCCGGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCCACACCGGCACCGCCACGCAGCGCACGCCCTGCTCGTtct    <  1:101902/149‑1 (MQ=255)
                                                                                                                                               aGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCCACACCGGCACCGCCACGCAGCGCACGCCCTGCTCGTtctc   <  2:479323/149‑1 (MQ=255)
                                                                                                                                                gCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCCACACCGGCACCGCCACGCAGCGCACGCCCTGCTCGTTctct  <  1:834103/149‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                                    
GGGCGCGGCTTCTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGTAGCCCAGCGCGCGCGAGAGCGCGAGCCCGGCCTGCTGAAGCTGCTCGCGGAAATTAGCCAGCTCCGCGTCGTCCACGCGGGAGGTCAGCGTCGACAGGCTCAGGGCGGCGATGACGCGGGACTCGTGGTTCCACACCGGCACCGCCACGCAGCGCACGCCCTGCTCGTTCTCT  >  NC_000913_3_pae_pgi/288295‑288587

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.