New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	4611277 =	64 (0.860)	4 (0.060)	4/266	10.4	5.9%	intergenic (+16/‑111)	osmY/ytjA	salt‑inducible putative ABC transporter periplasmic binding protein/uncharacterized protein
	?	NC_000913_3_pae_pgi	4611299 =	67 (0.960)					intergenic (+38/‑89)	osmY/ytjA	salt‑inducible putative ABC transporter periplasmic binding protein/uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCTCTCCGGTACCGTCGATTCTCAGGCACAAAGTGACCGTGCTGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTATGTTTCGTTGGGGCATCATATTTCTGGTTATCGCGTTAATCGCCGCCGCACTTGG  >  NC_000913_3_pae_pgi/4611156‑4611443                                                                                                                                                |                                                                                                                                                 gCTCTCCGGTACCGTCGATTCTCAGGCACAAAGTGACCGTGCTGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGAt                                                                                                                                             <  1:243330/149‑1 (MQ=255)   tctcCGGTACCGTCGATTCTCAGGCACAAAGTGACCGTGCTGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAGCGTTGTCGNGCGGCGGGAcgt                                                                                                                                           >  1:112954/1‑149 (MQ=255)   tctcCGGTACCGTCGATTCTCAGGCACAAAGTGACCGTGCTGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGAtgt                                                                                                                                           >  1:1129555/1‑149 (MQ=255)       cGGTACCGTCGATTCTCAGGCACAAAGTGACCGTGCTGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGcac                                                                                                                                       <  1:1260254/149‑1 (MQ=255)           aCCGTCGATTCTCAGGCACAAAGTGACCGTGCTGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACcaca                                                                                                                                   <  2:437404/149‑1 (MQ=255)               tCGATTCTCAGGCACAAAGTGACCGTGCTGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACCCTaa                                                                                                                               >  2:716064/1‑149 (MQ=255)               tCGATTCTCAGGCACAAAGTGACCGTGCTGAAAGTATCGCCAAAGCGGGAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCCCCACACCaa                                                                                                                               >  2:716082/1‑149 (MQ=255)                  aTTCTCAGGCACAAAGTGACCGTGCTGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTaaaaa                                                                                                                            >  2:649767/1‑149 (MQ=255)                  aTTCTCAGGCACAAAGTGACCGTGCTGAAAGTATCGCCAAAGCGGTAGATGGAGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTaaaaa                                                                                                                            >  2:650984/1‑149 (MQ=255)                      tcAGGCACAAAGTGACCGTGCTGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGCTCTGAAAACTAAGTAATTCGTCGTAACTCGTCCCACCGAACTTTGTCGTGAGGCGCGATGTGCACCACACCAAAACTATc                                                                                                                        >  2:141063/1‑149 (MQ=255)                         ggCACAAAGTGACCGTGCTGAAAGTATCGCCAAAGCGGTAGATGGTGTGGAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCAGAACTTTGCCGGGAGGCGCAATGTGCCCGACCCTAAAATTATTGCa                                                                                                                     >  2:1010362/1‑149 (MQ=255)                         ggCACAAAGTGACCGTGCTGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCa                                                                                                                     >  1:1262120/1‑149 (MQ=255)                          gCACAAAGTGACCGTGCTGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCAt                                                                                                                    >  1:1086681/1‑149 (MQ=255)                           cacaAAGTGACCGTGCTGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCAtt                                                                                                                   <  1:666684/149‑1 (MQ=255)                            acaAAGTGACCGTGCTGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTg                                                                                                                  >  1:756998/1‑149 (MQ=255)                               aaGTGACCGTGCTGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGt                                                                                                               >  2:1083556/1‑149 (MQ=255)                                 gTGACCGTGCTGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGAGCGATGTGCACCACACTAAAAATATCGCATGGAGTGa                                                                                                             >  2:1158874/1‑149 (MQ=255)                                     ccGTGCTGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCCCATTGAggcctttt                                                                                                         >  1:35926/1‑142 (MQ=255)                                           tGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGGTTGTCAGGcg                                                                                                   >  2:1235148/1‑148 (MQ=255)                                           tGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCt                                                                                                   >  1:564905/1‑149 (MQ=255)                                           tGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCt                                                                                                   >  1:1005137/1‑149 (MQ=255)                                              acgTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGca                                                                                                                                        >  1:857707/3‑109 (MQ=255)                                              aaGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGca                                                                                                                                        <  2:857707/109‑1 (MQ=255)                                               aGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATGGAGTGATTTTCACGCTCata                                                                                               >  1:139362/1‑149 (MQ=255)                                                 tATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATc                                                                                             <  1:892940/149‑1 (MQ=255)                                                   tCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCaa                                                                                           >  2:752055/1‑149 (MQ=255)                                                      ccAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCg                                                                                        <  2:564905/149‑1 (MQ=255)                                                       cAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCgg                                                                                       >  2:101926/1‑149 (MQ=255)                                                          aGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGa                                                                                    <  1:731504/149‑1 (MQ=255)                                                                aGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTaa                                                                              <  1:608673/149‑1 (MQ=255)                                                                aGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTaa                                                                              <  2:134676/149‑1 (MQ=255)                                                                   tGGTATGAAAAGCGTTAAAAATGATCTGAAAACTTAGTAATTCGTCGTAATTCGTCATTCCGAAATTTGTCGGGAGGTGAGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTa                                                                           <  2:456022/149‑1 (MQ=255)                                                                     gtgtGAAAAGCGTTAAAAATGATATGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACCTTGTCGGAAAGCGCGATGTGCAGCACACTAAACATATCACCTTGAGTGCTTTTCACCACCATACCAACCGGAGACCTTCACtgct                                                                         >  2:209796/1‑146 (MQ=255)                                                                     gctagAAAATCCTTAAACAGGATCTGACACCTAATGAATTCGTCGTAATTCCTCCGCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATg                                                                         <  2:374473/145‑1 (MQ=255)                                                                       gtgAAAAGCTTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCCTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGt                                                                       <  1:600045/149‑1 (MQ=255)                                                                          aaaaGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCAGTGAGTGATTTTCACGCTCATCACAAGCGGTGACCTTAACTATggggaa                                                                    >  1:731801/1‑145 (MQ=255)                                                                            aaGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTCTGGTAAAgg                                                                  >  1:673424/1‑149 (MQ=255)                                                                             aGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGga                                                                 >  2:2357/1‑149 (MQ=255)                                                                                gTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGAc                                                              <  2:336176/149‑1 (MQ=255)                                                                                    aaaaTGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCtt                                                          >  2:131866/1‑149 (MQ=255)                                                                                      aaTGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTAt                                                        <  1:2357/149‑1 (MQ=255)                                                                                           tCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACcaca                                                                                                                                   <  1:308941/69‑1 (MQ=255)                                                                                           tCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACcaca                                                                                                                                   >  2:308941/1‑69 (MQ=255)                                                                                              gAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTATGTTTCGtt                                                <  1:1191229/149‑1 (MQ=255)                                                                                                aaaCTAAGTCATTCGTCCTAATGCGTCCTCCCGAACTTTGACGGGCGGCGCCATGTGCACAACACTAAAAATATCGCATTGAGTGATTTTCACGCTCACATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTATGTTTCGTTgg                                              <  2:79090/149‑1 (MQ=255)                                                                                                      aGTAATTCGTCGGAATTCGTCCCCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTATGTTTCGTTGGGGcatc                                        <  1:12450/149‑1 (MQ=255)                                                                                                          attcgtcgtaattcgtcCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTATGTTTCGTTGGGGCATCatat                                    >  2:246195/1‑149 (MQ=255)                                                                                                             cgtcgtaattcgtcCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTATGTTTCGTTGGGGCATCATATTTc                                 <  1:131866/149‑1 (MQ=255)                                                                                                              gtcttaattcttcCTCCCGAGCTTTGTCGGGAGGCGCGATGTGCACCAGACGAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTATGTTTCGTTGGGGCATCATATTTCt                                <  2:112954/149‑1 (MQ=255)                                                                                                              gtcgtaattcgtcCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTATGTTTCGTTGGGGCATCATATTTCt                                >  1:287060/1‑149 (MQ=255)                                                                                                               tcgtaattcgtcCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATg                                                                         <  1:1059908/107‑1 (MQ=255)                                                                                                               tcgtaattcgtcCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATg                                                                         >  2:1059908/1‑107 (MQ=255)                                                                                                               tcgtaattcgtcCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTATGTTTCGTTGGGGCATCATATTTCTg                               >  1:688469/1‑149 (MQ=255)                                                                                                               tcgtaattcgtcCCCCCGAACTTTGTCCGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCCCGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTATGTTTCGTTGGGGCATCATATTTCTg                               <  1:1545/149‑1 (MQ=255)                                                                                                                 gtaattcgtcCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTATGTTTCGTTGGGGCATCATATTTCTGGt                             >  2:1006868/1‑149 (MQ=255)                                                                                                                  taattcgtcCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTATGTTTCGTTGGGGCATCATATTTCTGGtt                            <  1:1083556/149‑1 (MQ=255)                                                                                                                    attggccctccCGAATTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTATGTTTCGTTGGGGCATCATATTTCTGGTTAt                          <  2:1031747/143‑1 (MQ=255)                                                                                                                    attcgtcCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTATGTTTCGTTGGGGCATCATATTTCTGGTTAt                          <  1:101926/149‑1 (MQ=255)                                                                                                                          ccctcggAACTTTGCCGGTCGGCCGGATGTGCACCACACTAAAAATATCGCATTGAGGGATTGTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGTCGCTTATGTTTCGTTGGGGCATCATATTTCTGGTTATCGCGtt                    <  2:1153495/143‑1 (MQ=255)                                                                                                                            tccCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGCGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTATGTTTCGTTGGGGCATCATATTTCTGGTTATAGCGTTaa                  >  1:834019/1‑149 (MQ=255)                                                                                                                            tccCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTATGTTTACCACGGGCATCATATTTCTGGTTATCGCGTTaa                  <  1:650984/149‑1 (MQ=255)                                                                                                                            tccCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTATGTTTAAGGGGGGTATCATATTTCTGGTTATCGCGTTaa                  <  1:649767/149‑1 (MQ=255)                                                                                                                             cccGAGCTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATGTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTATGTTTCGTTGGGGCATCATATTTCTGGTTATCGCGTTAAt                 <  1:663115/149‑1 (MQ=255)                                                                                                                              ccGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTaaa                                                                    >  2:174916/1‑97 (MQ=255)                                                                                                                              ccGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTaaa                                                                    <  1:174916/97‑1 (MQ=255)                                                                                                                              ccGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTATGTTTCGTTGGGGCATCATATTTCTGGTTATCGCGTTAATc                >  1:107433/1‑149 (MQ=255)                                                                                                                              ccGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTATGTTTCGTTGGGGCATCATATTTCTGGTTATCGCGTTAATc                <  2:756998/149‑1 (MQ=255)                                                                                                                                           ggAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTATGTTTCGTTGGGGCATCATATTTCTGGTTATCGCGTTAATCGCCGCCGCACTTg   >  1:467330/1‑149 (MQ=255)                                                                                                                                            gAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTATGTTTCGTTGGGGCATCATATTTCTGGTTATCGCGTTAATCGCCGCCGCACTTgg  <  1:393533/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                 GCTCTCCGGTACCGTCGATTCTCAGGCACAAAGTGACCGTGCTGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTATGTTTCGTTGGGGCATCATATTTCTGGTTATCGCGTTAATCGCCGCCGCACTTGG  >  NC_000913_3_pae_pgi/4611156‑4611443

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.