| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | 4248647 = | 513 (12.710) | 13 (0.340) | 8/264 | 3.3 | 4.7% | noncoding (67/125 nt) | REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913_3_pae_pgi | = 4325290 | 37 (0.970) | noncoding (229/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAAATCTGGAGCTCAGCGGTAGCCAGGCAATAGCGCGCTAAACCCGATAATCAGAGGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_pgi/4248801‑4248647‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCC < NC_000913_3_pae_pgi/4325290‑4325148 AAAATCTGGAGCTCAGCGGTAGCCAGGCAATAGCGCGCTAAACCCGATAATCAGAGGGGCTTTCGCCCCTTTCAGATAATGACAAACTGTTTTTATCCCGGATGAGCCGGAAACGCCTTATCCGGCCTACATTTGACAACCGTTCTAGG > 2:81350/1‑149 AAATCTGGAGGTCAGCGGTAGCCAGGCAATAGCGCGCTAAACCCGATAATCAGAGGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGC < 2:576563/149‑1 AAATCTGGAGCTCAGCGGTAGCCAGGCAATAGCGCGCTAAACCTGATAATCAGAGGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAAAGCCTTATCCGACCTTCATTTGACAGCCGTTGTAGGC < 2:635955/149‑1 AAATCTGGAGCTCAGCGGTAGCCAGGCAATAGCGCGCTAAACCCGATAATCAGAGGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGC > 1:108553/1‑149 AAATCTGGAGCTCAGCGGTAGCCAGGCAATAGCGCGCTAAACCCGATAATCAGAGGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGC < 2:231599/149‑1 AAATCTGGAGCTCAGCGGTAGCCAGGCAATAGCGCGCTAAACCCGATAATCAGAGGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGC < 2:3707/149‑1 AAATCTGGAGCTCAGCGGTAGCCAGGCAATAGCGCGCTAAACCCGATAATCAGAGGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGC < 1:206819/149‑1 AATCTGGAGCTCAGCGGTAGCCAGGCAATAGCGCGCTAAACCCGATAATCAGAGGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCC > 1:264356/1‑149 AATCTGGAGCTCAGCGGTAGCCAGGCAATAGCGCGCTAAACCCGATAATCAGAGGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCC < 1:77092/149‑1 ATCTGGAGCTCAGCGGTAGCCAGGCAATAGCGCGCTAAACCCGATAATCAGAGGGTCTTTCGCTCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCT < 1:641732/149‑1 ATCTGGAGCTCAGCGGTAGCCAGGCAATAGCGCGCTAAACCCGATAATCAGAGGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCT < 2:596745/149‑1 ATCCGGAGCTCAGCGGTAGCCAGGCAATAGCGCGCTAAACCCGATAATCAGAGGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCT < 1:153272/149‑1 tcttggGCTCATCGGTAGCCAGGCAATAGCGCGCTAAACCCGATAATCAGAGGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCTG < 2:597356/143‑1 TCTGGAGCTCAGCGGTAGCCAGGCAATAGCGCGCTAAACCCGATAATCAGAGGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCTG > 2:493783/1‑149 TCTGGAGCTCAGCGGTAGCCAGGCAATAGCGCGCTAAACCCGATAATCAGAGGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCTG > 1:347734/1‑149 CTGGAGCTCAGCGGTAGCCAGGCAATAGCGCGCTAAACCCGATACTCAGAGGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCTGA < 1:548193/149‑1 CTGGAGCTCAGCGGTAGCCAGGCAATAGCGCGCTAAACCCGATAATCAGAGGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCTGA < 1:636318/149‑1 CTGGAGCTCAGCGGTAGCCAGGCAATAGCGCGCTAAACCCGATAATCAGAGGGGCTTTCGCCCCTGTCAGATAATGAAAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGCCTTAAATTTAACAGCCGTTATAGGCCTGA > 2:719914/1‑149 TGGAGCTCAGCGGTAGCCAGGCAATAGCGCGCTAAACCCGATAATCAGAGGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCTGAT > 1:279414/1‑149 TGGAGCTCAGCGGTAGCCAGGCAATAGCGCGCTAAACCCGATAATCAGAGGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCTGAT > 2:28408/1‑149 TGGAGCTCAGCGGTAGCCAGGCAATAGCGCGCTAAACCCGATAATCAGAGGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCTGAT < 2:188696/149‑1 gggGCTGAGCGGTAGCCAGGCAATGGGGCGCTAAACCGGATAATCAGAGGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCTGATa < 2:254903/146‑2 GGAGCTCAGCGGTAGCCAGGCAATAGCGCGCTAAACCCGATAATCAGACGGGCTTTCGCCCCTCTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTACACGCCTTATCCGGCCTACATTTGCAAGCAGTTGTAGGGCTGAaa > 1:634340/1‑147 CAGGCAATAGCGCGCTAAACCCGATAATCAGAGGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCTGATGCGACGCTTGCGCGTCT > 2:22294/1‑149 GCAATAGCGCGCTAAACCCGATAATCAGAGGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCTGATAAGACGCTTGCGCGTCTTAT < 1:156998/149‑1 CAATAGCGCGCTAAACCCGATAATCAGAGGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCTGATAAGACGCTTGCGCGTCTTATC < 2:697212/149‑1 AATAGCGCGCTAAACCCGATAATCAGAGGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCTGATAAGACGCTTGCGCGTCTTATCA < 1:125793/149‑1 AATAGCGCGCTAAACCCGATAATCAGAGGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCTGATAAGACGCTTGCGCGTCTTATCA < 1:548033/149‑1 ATAGCGCGCTAAACCCGATAATCAGAGGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTTGACAGCCGTTGTAGGCCTGATGCGACGCTTGCGCGTCTTATCcg < 1:720891/149‑3 TAGCGCGCTAAACCCGATAATCAGAGGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCTGATGCGACGCTTGCGCGTCTTATCAGG < 1:386314/149‑1 TAGCGCGCTAAACCCGATAATCAGAGGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCTGATGCGACGCTTGCGCGTCTTATCAGG < 1:22294/149‑1 AGCGCGCTAAACCCGATAATCAGAGGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCTGATGCGACGCTTGCGCGTCTTATCAGGC < 2:332322/149‑1 TTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGC < 1:654400/81‑1 TTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGC > 2:654400/1‑81 ATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCTGATGCGACGCTTGCGCGTCTTATCAGG < 2:160455/104‑1 ATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCTGATGCGACGCTTGCGCGTCTTATCAGG > 1:160455/1‑104 GGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCTGATGCGACGCTTGCGCGTCTTATCAGGC < 2:164613/75‑1 GGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCTGATGCGACGCTTGCGCGTCTTATCAGGC > 1:164613/1‑75 CCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTCCACATTCCCGCACCC > 2:435667/1‑149 ATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCCGACTGCC > 2:111560/1‑98 AAAATCTGGAGCTCAGCGGTAGCCAGGCAATAGCGCGCTAAACCCGATAATCAGAGGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_pgi/4248801‑4248647‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCC < NC_000913_3_pae_pgi/4325290‑4325148 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |