BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	4239000 =	420 (10.400)	10 (0.270)	8/256	3.2	2.5%	intergenic (+10/+37)	yjbH/yjbT	DUF940 family extracellular polysaccharide protein/putative periplasmic protein
*	?	NC_000913_3_pae_pgi	4239032 =	392 (10.550)	10 (0.270)	8/256	3.2	2.5%	intergenic (+42/+5)	yjbH/yjbT	DUF940 family extracellular polysaccharide protein/putative periplasmic protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 422 total aligned reads displayed.

GATCTCTTCTCGTCTGGCCCGACACGCAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAGGTCTGGT  >  NC_000913_3_pae_pgi/4238853‑4239148

  tctcTTCTCGTCTCGCCCGACACGCAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGCCCAGCGACCGTAGCG‑TCCATTTCCGCTAAGTCATGGTACAgg                                                                                                                                                   >  2:503069/1‑149 (MQ=255)

   ctctTCTCGTCTGGCCCGACACGCAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGt                                                                                                                                                  <  1:270742/149‑1 (MQ=255)

    tcttctCGTCTGGCCCGACACGCAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTg                                                                                                                                                 >  1:230660/1‑149 (MQ=255)

     catctcGTCTGGCCCGACAAGCATCCATGCGGCGATTGGCTGGACGGCGCTGACGCGTAACGGGGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATAACATGACCAGCG‑CCCCAGCGCGTAAGTTCCGCTAAGTCATGGGAAAGGTGc                                                                                                                                                <  2:519511/147‑1 (MQ=255)

      ttctCGTCTGGCCCGACACGCAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCTAGTGGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGcc                                                                                                                                               >  1:707351/1‑149 (MQ=255)

      ttctCGTCTGGCCCGACACGCAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTACGTTATGGGGAAGGTGcc                                                                                                                                               >  1:368828/1‑149 (MQ=255)

      ttctCGTCTGGCCCGACACGCAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGcc                                                                                                                                               >  1:34747/1‑149 (MQ=255)

       tcccGTCTGGCCCGACACGCAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGGAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCa                                                                                                                                              <  2:249908/146‑1 (MQ=255)

         tcGTCTGGCCCGACACGCAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGt                                                                                                                                            >  1:175835/1‑149 (MQ=255)

           gTCTGGCCCGACACGCAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGttt                                                                                                                                          >  1:645568/1‑149 (MQ=255)

            tCTGGCCCGACACGCAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGtttt                                                                                                                                         <  1:519202/149‑1 (MQ=255)

            tCTGGCCCGACACGCAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGtttt                                                                                                                                         >  1:448017/1‑149 (MQ=255)

             cTGGCCCGGCACCGGGCCGTGGGGCGATTGGCTGGACGCCGCTGACGCGGGACGGTGGTAAGCAACTTGGGCGTAAGTGCCAGTTGTATGACATGACCAGCGACCGCAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCactagtc                                                                                                                                        <  2:7855/149‑7 (MQ=255)

                 cccGACACGCAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGcac                                                                                                                                    <  1:495967/149‑1 (MQ=255)

                   cGACACGCCGCCGTGGGGCGGTTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGcactc                                                                                                                                  <  1:307840/149‑1 (MQ=255)

                    gACACGCAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGGAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCAAGTTTTCGcactca                                                                                                                                 >  1:599370/1‑149 (MQ=255)

                      cacGCAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGcactcact                                                                                                                               <  2:175835/149‑1 (MQ=255)

                      cacGCAGCCGGGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGcactcact                                                                                                                               <  2:670622/149‑1 (MQ=255)

                       acGCAGCCGTGCGGCGATTGGCTGGGCGCCGCTGACGCGTGACGGGGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTg                                                                                                                              >  2:359681/1‑149 (MQ=255)

                        cGCAGCCGTGCGGCGATTGGCTGCACGCCGCTGACGCGTGACGGGGGTCAGCAACTTGGGCGTAATTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTgg                                                                                                                             <  1:188650/149‑1 (MQ=255)

                         gCAGCCGTGCGGCGATTGGCTGGAGGCCGCTGACGCGTGAGGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGc                                                                                                                            <  2:62756/149‑1 (MQ=255)

                         gCAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTCAGTCATGGGAAAGGGGCCAGTTTTCGCACTCACTGGc                                                                                                                            >  2:14320/1‑149 (MQ=255)

                          cAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCa                                                                                                                           >  1:529190/1‑149 (MQ=255)

                                tGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCa                                                                                                                     >  1:621861/1‑149 (MQ=255)

                                   ggcgATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTc                                                                                                                  <  2:381577/149‑1 (MQ=255)

                                   ggcgATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTc                                                                                                                  <  2:645568/149‑1 (MQ=255)

                                   ggcgATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTc                                                                                                                  <  1:605646/149‑1 (MQ=255)

                                              ggACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTg                                                                                                       >  1:488481/1‑149 (MQ=255)

                                              ggACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGAACAGCACGTGTAGGG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTg                                                                                                       >  1:463861/1‑149 (MQ=255)

                                                  gccgcTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGa                                                                                                   <  2:404979/149‑1 (MQ=255)

                                                  gccgcTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGa                                                                                                   >  2:124043/1‑149 (MQ=255)

                                                    cgcTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGt                                                                                                      >  1:247960/1‑144 (MQ=255)

                                                       tGATGCGTGACGGTGGTCAGCAATTTGGGCGTAATTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCAt                                                                                              <  1:147164/149‑1 (MQ=255)

                                                       tGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCAt                                                                                              <  1:362823/149‑1 (MQ=255)

                                                        gACGCGGGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATc                                                                                             <  1:127445/149‑1 (MQ=255)

                                                           gcgTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAgg                                                                                          >  2:325110/1‑149 (MQ=255)

                                                              tGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAAc                                                                                       >  1:715657/1‑149 (MQ=255)

                                                              tGACGGGGGTGAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAAc                                                                                       <  2:603310/149‑1 (MQ=255)

                                                                    tgttttgCAAGTTGGGCGTAAGTTCGAGTTGTATGACATGACCAGCGACGGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGtt                                                                                 <  2:181572/143‑1 (MQ=255)

                                                                       tCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCAc                                                                              >  1:693113/1‑149 (MQ=255)

                                                                       tCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCAc                                                                              >  1:196755/1‑149 (MQ=255)

                                                                       tCAGCAACGTGGGCGTAAGTTCCAGTGGGATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCAc                                                                              <  2:681468/149‑1 (MQ=255)

                                                                        cAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCAt                                                                                                                    >  2:621423/1‑110 (MQ=255)

                                                                            aaCTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTc                                                                                                                  <  2:236886/108‑1 (MQ=255)

                                                                              cTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGt                                                                       >  1:668475/1‑149 (MQ=255)

                                                                                   gCGTAAGTTCCAGTTGTATGACAGGACCAGCGCCCGTAGCG‑TAAAGTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGACGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGca                                                                  >  1:571795/1‑148 (MQ=255)

                                                                                    cggaaGTTCCAGTTGTATGACATGACCAGGGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGGGCCAGTTTGCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGa                                                                 <  2:307065/146‑1 (MQ=255)

                                                                                    cGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCGTTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGa                                                                 <  2:676549/149‑1 (MQ=255)

                                                                                    cGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGa                                                                 <  2:529190/149‑1 (MQ=255)

                                                                                     gTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGAt                                                                >  2:716820/1‑149 (MQ=255)

                                                                                      tAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATc                                                               <  1:35889/149‑1 (MQ=255)

                                                                                       aaGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCt                                                              <  1:421351/149‑1 (MQ=255)

                                                                                         gTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTgg                                                            <  2:209470/149‑1 (MQ=255)

                                                                                          ttCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGgt                                                           <  2:146788/149‑1 (MQ=255)

                                                                                           tCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGgtg                                                          >  1:240533/1‑149 (MQ=255)

                                                                                           tCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGgtg                                                          <  1:157939/149‑1 (MQ=255)

                                                                                            ccAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAGTGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGgtgt                                                         <  1:473369/149‑1 (MQ=255)

                                                                                             cAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGGGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCGGTGGAGCCGTCACGAACGCAGTTCACTCCCGGTTTTCGAGCTGttgtg                                                        >  1:400887/1‑149 (MQ=255)

                                                                                              aGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGaa                                                                                        >  1:406036/1‑116 (MQ=255)

                                                                                              aGTTGTATGACATGACCACTTACCGTAGCC‑TCAATTTCCGCTAAGTAATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCCTCTTCATTCTGAATGGCCTGCCGAGCCATCAGGACCGCAGTTCACTCCCGGTTTGCGATCTGgtgtgt                                                       <  1:221622/149‑1 (MQ=255)

                                                                                               gTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTa                                                      >  2:478872/1‑149 (MQ=255)

                                                                                                ttGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTaa                                                     >  1:507144/1‑149 (MQ=255)

                                                                                                  tgatgacatgacCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAg                                                   <  1:179375/147‑1 (MQ=255)

                                                                                                   tATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAgg                                                  >  2:224389/1‑149 (MQ=255)

                                                                                                   tATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAgg                                                  <  2:444491/149‑1 (MQ=255)

                                                                                                    atgacatgacCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGttt                                                                     >  1:684875/1‑129 (MQ=255)

                                                                                                         atgacCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGaaaa                                            >  2:459128/1‑149 (MQ=255)

                                                                                                           gacCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACa                                          <  2:24152/149‑1 (MQ=255)

                                                                                                             ccAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTGCACTCTTACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACCtt                                        >  1:680063/1‑149 (MQ=255)

                                                                                                              cAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTc                                       <  2:414496/149‑1 (MQ=255)

                                                                                                              cAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAAAGCAGTTCACTCCCGCTTTGCGACCCGGTGTGTAAAGGCGAAAACACTc                                       >  2:193577/1‑149 (MQ=255)

                                                                                                               aGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCt                                      >  1:386757/1‑149 (MQ=255)

                                                                                                                gagACCGTAGCG‑TAAATTTCGGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTg                                     >  2:558178/3‑149 (MQ=255)

                                                                                                                gCGACCGTAGCG‑TCAATTTCCGCTAAGTCGTGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTg                                     <  1:281016/149‑1 (MQ=255)

                                                                                                                gCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTg                                     <  1:123573/149‑1 (MQ=255)

                                                                                                                  gACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTc                                   <  1:101272/149‑1 (MQ=255)

                                                                                                                     cGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTc                                <  2:28392/149‑1 (MQ=255)

                                                                                                                     cGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTc                                <  1:379368/149‑1 (MQ=255)

                                                                                                                     cGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTc                                <  2:391802/149‑1 (MQ=255)

                                                                                                                     cGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTc                                <  2:348947/149‑1 (MQ=255)

                                                                                                                     cGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGCCTTc                                <  1:397262/149‑1 (MQ=255)

                                                                                                                           g‑TCAATTTCCGCTAAGTGATGGGAAAGGTGCCAGTTTTCGCACTCACGGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTcc                          <  1:672193/149‑1 (MQ=255)

                                                                                                                           g‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTcc                          >  2:448299/1‑149 (MQ=255)

                                                                                                                           g‑TCAAGTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTcc                          <  1:558178/149‑1 (MQ=255)

                                                                                                                             tCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCg                         >  2:264470/1‑149 (MQ=255)

                                                                                                                               aaTTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGGTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTc                       >  2:199279/1‑149 (MQ=255)

                                                                                                                                 tttCCGCTAAGTCATGGGAAAGGTGCCGGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTATTCCTGTCCGTCGa                     >  2:709337/1‑149 (MQ=255)

                                                                                                                                       cTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCgg               <  1:546411/149‑1 (MQ=255)

                                                                                                                                         aaGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGtt             <  1:655607/149‑1 (MQ=255)

                                                                                                                                            tCATGGGAAAGGGGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCa          <  1:84816/149‑1 (MQ=255)

                                                                                                                                             cttgagAAAGGTTCCAGTTTTCGCACTCACTGACACCTTTATTCTTAATTGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAg         <  1:619769/144‑1 (MQ=255)

                                                                                                                                             cATGGGAAAGGTGCCAGGTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAg         <  1:437228/149‑1 (MQ=255)

                                                                                                                                              aTGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGtt                                                                                 >  1:587028/1‑76 (MQ=255)

                                                                                                                                              aTGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGtt                                                                                 <  2:587028/76‑1 (MQ=255)

                                                                                                                                              aTGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGGCCGTCGATATCGGTTGCAgg        >  1:133828/1‑149 (MQ=255)

                                                                                                                                               tGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAGGt       >  1:97110/1‑149 (MQ=255)

                                                                                                                                                gggAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTTCTGTCCGTGGATATCGGTTGCAgggc      >  1:316586/1‑147 (MQ=255)

                                                                                                                                                gggAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAGGTc      >  1:212762/1‑149 (MQ=255)

                                                                                                                                                 ggAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATc                 <  2:489611/137‑1 (MQ=255)

                                                                                                                                                    aaGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAACACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAGGTCTGGt  <  2:693113/149‑1 (MQ=255)

GATCTCTTCTCGTCTGGCCCGACACGCAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCG‑TCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAGGTCTGGT  >  NC_000913_3_pae_pgi/4238853‑4239148

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.