New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_pgi 4218566 =70 (1.320)9 (0.170)
+T
9/268 NT 11.5% noncoding (131/132 nt) REP311 (repetitive extragenic palindromic) element; contains 3 REP sequences REP311 (repetitive extragenic palindromic) element; contains 3 REP sequences
?NC_000913_3_pae_pgi = 4253287 NA (NA)noncoding (127/130 nt) RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site

ACCGGAGGTCACTTCGAGGAATCGACCATACTGAGCATCGAAGCCTTGCAAAATGGTTTGAGCAATCAATAATTCCAGGCCACGCGGCATTTAGCGCCCTCATCAGGAGCAGAGAATTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_pgi/4218685‑4218566
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGATGCGGCGAAAACGCCTTATCCGGCCTTCCATAATCTGCAAATTCAATAAATTGCGATGTGTTGTGTAGGCCTGAGAAGCGCCGCGCATCAGGCAACCCAGAAGAAAGCCGGATGATCATCCGGCTTTTTTACATCATCAGAAA  <  NC_000913_3_pae_pgi/4253287‑4253142
                                                                                                                        |                                                                                                                                                  
ACCGGAGGTCACTTCGAGGAATCGACCATACTGAGCATCGAAGCCTTGCAAAATGGTTTGAGCAATCAATAATGCCAGGCCACGCGGCATTTAGCGCCCTCATAAAAAGCTGCGAGGGGTTGGATGCGGCGAAAACGCATTATCCGTCC                                                                                                                        >  1:939064/1‑149
                  ctactGACCATACTTAGCATGTAAGCCTTGCAAAATGGTTTGAGCAATCAATAATTCCAGTCGACGCGGTATTTAGCGCCCTTATCAGGAGCAGTGAAGTGCTGGATGCGGCGAAAATTCCTTATCCGGCCTTCCATACTCTGCAAATT                                                                                                      <  2:187220/144‑1
                                          GCCTTGCAAAATGGTTTGACACATCAATAATTCCAGGCCACGCGGCATTTAGCGTCCTTTTCAGGAGCAGAGAATTGCTGGATGCGGCGAAAACGCCTTATCCGGCCTTCCATAATCTGCAAATTCAATAAATTGCGATGTGTTGTGTA                                                                              <  1:379235/149‑1
                                                         TTGAGCAATCAATAATTCCAGGCCACGCGGCATTTAGCGCCCTCATCAGGAGCAGAGAATTGCTGGATGCGGCGAAAACGCCTTATCCGGCCTTCCATAATCTGCAAATTCAATAAATTGCGATGTGTTGTGTAGGCCTGAGAAGCGCC                                                               <  1:892285/149‑1
                                                              CAATCAATAATTCCAGGCCACGCGGCATTTAGCGCCCTCATCAGGAGCAGAGAATTGCTGGATGCGGCGAAAACGCCTTATCCGGCCTTCCATAATCTGCAAATTCAATAAATTGCGATGTGTTGTGTAGGCCTGAGAAGCGCCGCGCA                                                          >  1:829268/1‑149
                                                                                                      tgAGGAGCAGAGAATTGCTGGATGCGGCGAAAACGACTTATCCGGCCTTCCATAATCTGCAAATTCAATAAATTGCGATGTGGTGTGTAGGCCTGAGAAGCGCCGCGCATCAGGCAACCCAGAAGAAAGCCGGATGATCATCCGGCTTT                  <  1:853638/147‑1
                                                                                                             cataaAATTGCTGCATGCGGCGAAAACGCCTTATTCGGCCTTCCATAATCTGCAAATTCAATAAATTGCGATGTGTTGTGTAGGCCTGAGAAGCGCCGCGCATCAGGCAACCCAGAAGAAAGCCGGATGATCATCCGGCTTTTTTACAT           <  1:130721/144‑1
                                                                                                                gGAATTGCTGGATGCGGCGAAAACGCCTTATCCGGCCTTCCATAATCTGCAAATTCAATAAATTGCGATGTGTTGTGTAGGCCTGGGAAGCGCCGCGCATCAGGCCACCCAGAAGAAAGCCGGATGATCATCCGGCTTTTTTACATCAT        <  2:283137/148‑1
                                                                                                                  AATTGCTGGATGCGGTGAGAACGCCTTATCCGGCCTTCCATAATCTGCAAATTCAATCAATTGCGATGTGTTGTGTAGGCCTGAGAAGCGCCGCGCATCAGGCAACCCAGAAGAAAGCCGGATGATCATCCGGCTTTTTTACATCATCA      <  2:320592/149‑1
                                                                                                                     TGCTGGATGCGGCGAAAACGCCTGATGCGGCCTTCCATAATCTGCAAATTCAATAAATTGCGATGTGTTGTGTAGGCCTGAGAAGCGCCGCGCATCAGGCAACCCAGAAGAAAGCCGGATGATCATCCGGCTTTTTTACATCATCAGAA   <  1:953204/149‑1
                                                                                                                      GCTGGATGCGGCGAAAACGCTTTTTTCGGCTTTCCTTAATCTGCTAATTCAATGAATTGCGATGTGTTGTGTAGGCCTGAGAAGCGCCGCGCATCAGGCAACCCAGAAGAAAGCCGGATGATCATCCGGCTTTTTTACATCATCAGAAA  <  1:36628/149‑1
                                                                                                                        |                                                                                                                                                  
ACCGGAGGTCACTTCGAGGAATCGACCATACTGAGCATCGAAGCCTTGCAAAATGGTTTGAGCAATCAATAATTCCAGGCCACGCGGCATTTAGCGCCCTCATCAGGAGCAGAGAATTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_pgi/4218685‑4218566
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGATGCGGCGAAAACGCCTTATCCGGCCTTCCATAATCTGCAAATTCAATAAATTGCGATGTGTTGTGTAGGCCTGAGAAGCGCCGCGCATCAGGCAACCCAGAAGAAAGCCGGATGATCATCCGGCTTTTTTACATCATCAGAAA  <  NC_000913_3_pae_pgi/4253287‑4253142

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.