New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_pgi = 4236302888 (16.760)3 (0.060) 3/260 NT 0.34% coding (146/738 nt) yjbG extracellular polysaccharide export OMA protein
?NC_000913_3_pae_pgi = 4236324 894 (17.530)coding (168/738 nt) yjbG extracellular polysaccharide export OMA protein
Rejected: Frequency below/above cutoff threshold.

CAAAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_pgi/4236150‑4236302
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaCCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGATCGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGGTTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAAGCAACGCG  <  NC_000913_3_pae_pgi/4236324‑4236177
                                                                                                                                                                                                                                                                                                              
CAAAATAATGATTAAACAAACTATTGTCGCTTTGCTTTTGAGTGTGGGGGCGCCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAG                                                                                                                                                           <  1:134795/149‑1
CAAAACAATTTTTAAACAAACTATTGTCTTGTTTCTTTTGCGTGCGAAATTTCCATCGGTCTTCGCGGCAGGAACCGTCAAGGTTTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAG                                                                                                                                                           <  1:479808/149‑1
CAAAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAATGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAG                                                                                                                                                           >  1:438015/1‑149
CAAAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAG                                                                                                                                                           >  1:869912/1‑149
CAAAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAG                                                                                                                                                           <  1:787072/149‑1
CAAAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAG                                                                                                                                                           <  1:689961/149‑1
CAAAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAG                                                                                                                                                           <  1:581920/149‑1
CAAAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAG                                                                                                                                                           <  1:577803/149‑1
CAAAACAATGATTAAACAAACTATTGTCGCGTTGATTTTGAGTGTGGGAGCGTCATCGGTTTTCGCGGCAGGAACCGGCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAG                                                                                                                                                           <  1:107160/149‑1
CAAAACAATAATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAG                                                                                                                                                           <  1:964626/149‑1
 aacactATGATTAAACAAACTCTTGCCGCGTGGCTTTTGAGGGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGGGTTCAGCAATGGCAGCAGTGAGGCTAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAGG                                                                                                                                                          <  1:321742/143‑1
 AAAACAATGATTAACTAAACTATTGTCGCGTTGCTTGTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAGG                                                                                                                                                          <  1:382597/149‑1
 AAAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAACCGCTAACGGGCGCAGAGCGTTTAATCGATCTGGTAGG                                                                                                                                                          >  2:940782/1‑149
 AAAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAGG                                                                                                                                                          >  1:323308/1‑149
 AAAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAGG                                                                                                                                                          >  1:883096/1‑149
 AAAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAGG                                                                                                                                                          >  2:520599/1‑149
 AAAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAGG                                                                                                                                                          <  2:856124/149‑1
  AAACAATGATTTAACAAATTAGTGGCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAGGC                                                                                                                                                         <  1:640974/149‑1
  AAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAGGC                                                                                                                                                         >  2:533629/1‑149
  AAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAGGC                                                                                                                                                         <  1:853904/149‑1
   AACAATGATTAAACAAACTATTGTCGCGTTTCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAGGCC                                                                                                                                                        <  1:597487/149‑1
   AACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCTGCAGGAAACGTCAAGGTGTTCAGCAATGGCAGAAGTGAGGACAAAACGCTAACGGGCGCAGAACATTTAATCGAGCTGGTAGGCC                                                                                                                                                        >  1:289547/1‑149
    ACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGCCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTCGGCCA                                                                                                                                                       >  1:552172/1‑149
    ACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGAGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCCAAACGCTAACGGGCGCAGAGCATTTAAACGATCTGGTCGGCCA                                                                                                                                                       >  2:201968/1‑149
           TTAAACAAACTATTGTCGTGTTGCTTTTGAGTGTGGGAGAGTCATCGGACTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGTCAGCAGTGAGGCCAAAACGCTAACGGGCGCGAAGCATCTAATCGAATTGGTAGGCCAatggcgg                                                                                                                                                >  2:449847/1‑142
              AACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCAGCAGGAACCGTCAAGAGGTTCATCAATGGCAGCAGGGAGGCCAGAACGCTAACGGGCGCAAAGCATTTAATCGATCTGGTAGGCCACCAccggtcg                                                                                                                                             >  2:98704/1‑142
                                 GCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAGGCCACCAGCTGTTTGCCAGCCGCGGTTGGCCTA                                                                                                                          <  2:506380/149‑1
                                                                                    GTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAGGCCACCAGCTGTTTGCCAGCCGCGGTTGGCCTACC                                                                                                                        >  2:755051/1‑100
                                                                                    GTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAGGCCACCAGCTGTTTGCCAGCCGCGGTTGGCCTACC                                                                                                                        <  1:755051/100‑1
                                                                                                                                                acccGGCCACCATCTGTCTGCTAGCCGCGGTTGGGCTACCAGACCTATTAAATGCTTTGCGCCAGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGCTTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAA          <  2:330683/145‑1
                                                                                                                                                   tgtCCACCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGATCGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGGTTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAAGCA       <  1:157873/146‑1
                                                                                                                                                    tGCCAGCAGGTGTGTGCCAGCCGCGGTTGGCCTACCAGATCGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGTCGGTTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAAGCAA      <  2:396009/148‑1
                                                                                                                                                    GGCCACCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGATCGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGGTTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAAGCAc      <  2:516155/149‑2
                                                                                                                                                    GGCCACCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGATCGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGGTTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAAGCAA      <  1:279247/149‑1
                                                                                                                                                    GGCCACCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGATCCATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCGTAACACCTTGACGGTTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAAGCAA      <  2:222417/149‑1
                                                                                                                                                    GGCCACCAGCTGTTTGCCAGCCGCGGTTGGCCTACAAGATCGATTAAATGCTCTGCGCCCGTTAAGGTTTTGGCCTCACTACTCCCATTGCTGAACACCTTGACGGTTCCTCCCGCGAACACCGATGACGCTCCCCCACACAACAGCca      >  2:487147/1‑147
                                                                                                                                                     GCCACCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGATCGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGGTTCCTACCGCGAAGACCGATGACGCTCCAACAACAAAAAGCAAC     >  2:320497/1‑149
                                                                                                                                                      CCACCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGATCGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAAAACCTTGACGGTTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAAGCAACG    >  1:47391/1‑149
                                                                                                                                                      CCACCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGATCGATTAAATGCTCTGCGCCCGTCAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGGTTCCTGCCCCGAAGACCGATGACGCTCCCACACTCAAAAGCAACG    >  1:251170/1‑149
                                                                                                                                                      CCACCAGCTGTGTGCCAGCCGCGGTTGGCCTACCAGATCGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGGTTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAAGCAACG    <  1:644447/149‑1
                                                                                                                                                       CACCTGCTGTTTGCCAGCCGCGGTTGGCTTACCAGTTGTGATTGAGTTTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCTATTGCTGAAGACCTTGACGGTTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAAGCAACGC   <  1:779716/149‑1
                                                                                                                                                       CACCAGCTGTTTGCTAGCCGCGGTTGGCCTACCAGATCGATTAAATGCTCTGCGCCTGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGGTTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAAGCAACGC   <  2:653546/149‑1
                                                                                                                                                       CACCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGATCGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCCCTGCTGCCATTGCTGAACACCTTGACGGTTCCTGCCGCGAAGCCCGATGACGCTACCCCACCACACAGCAACGC   >  2:239863/1‑149
                                                                                                                                                       CACCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGATCGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGGTTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAAGCAACGC   >  1:733341/1‑149
                                                                                                                                                       CACCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGATCGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGGTTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAAGCAACGC   <  2:455371/149‑1
                                                                                                                                                       CACCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGATCGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGGTTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAAGCAACGC   <  1:811389/149‑1
                                                                                                                                                       CACCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGATCGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGGTTCCTGCCGCGAAGACCGATGACGCTCCCACACCCAAAAGCAACGC   >  1:969285/1‑149
                                                                                                                                                       CACCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGATCGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGGTTCCTGCC                                         >  1:659086/1‑111
                                                                                                                                                       CACCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGATCGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGGTTCCTGCC                                         <  2:659086/111‑1
                                                                                                                                                       CACCAGCTGTTTGCCAGCCGCGGTTCGCCTACCAGATCGATTAAATGCTCTGCGCCCGTTAGCGCTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGATTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAAGCAACGC   <  1:906322/149‑1
                                                                                                                                                        ACCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGATCGATTAAATGCTCTGCGCCCGTTAGCGTTTTGTCCTCACTGCTGCCAGTGCTGAACACCTTGACGGTTCCTGCCGCGAAGACCGATGACGCCCCCACACCCTAAAGAACCGCG  >  2:81909/1‑149
                                                                                                                                                        ACCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGATCGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGGTTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAAGCAACGCG  >  2:837730/1‑149
                                                                                                                                                                                                                                                                                                              
CAAAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_pgi/4236150‑4236302
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaCCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGATCGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGGTTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAAGCAACGCG  <  NC_000913_3_pae_pgi/4236324‑4236177

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.