New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913_3_pae_pgi | = 4236302 | 888 (16.760) | 3 (0.060) | 3/260 | NT | 0.34% | coding (146/738 nt) | yjbG | extracellular polysaccharide export OMA protein |
? | NC_000913_3_pae_pgi | = 4236324 | 894 (17.530) | coding (168/738 nt) | yjbG | extracellular polysaccharide export OMA protein | |||||
Rejected: Frequency below/above cutoff threshold. |
CAAAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_pgi/4236150‑4236302 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaCCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGAT‑CGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGGTTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAAGCAACGCG < NC_000913_3_pae_pgi/4236324‑4236177 CAAAATAATGATTAAACAAACTATTGTCGCTTTGCTTTTGAGTGTGGGGGCGCCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAG < 1:134795/149‑1 CAAAACAATTTTTAAACAAACTATTGTCTTGTTTCTTTTGCGTGCGAAATTTCCATCGGTCTTCGCGGCAGGAACCGTCAAGGTTTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAG < 1:479808/149‑1 CAAAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAATGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAG > 1:438015/1‑149 CAAAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAG > 1:869912/1‑149 CAAAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAG < 1:787072/149‑1 CAAAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAG < 1:689961/149‑1 CAAAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAG < 1:581920/149‑1 CAAAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAG < 1:577803/149‑1 CAAAACAATGATTAAACAAACTATTGTCGCGTTGATTTTGAGTGTGGGAGCGTCATCGGTTTTCGCGGCAGGAACCGGCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAG < 1:107160/149‑1 CAAAACAATAATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAG < 1:964626/149‑1 aacactATGATTAAACAAACTCTTGCCGCGTGGCTTTTGAGGGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGGGTTCAGCAATGGCAGCAGTGAGGCTAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAGG < 1:321742/143‑1 AAAACAATGATTAACTAAACTATTGTCGCGTTGCTTGTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAGG < 1:382597/149‑1 AAAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAACCGCTAACGGGCGCAGAGCGTTTAATCGATCTGGTAGG > 2:940782/1‑149 AAAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAGG > 1:323308/1‑149 AAAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAGG > 1:883096/1‑149 AAAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAGG > 2:520599/1‑149 AAAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAGG < 2:856124/149‑1 AAACAATGATTTAACAAATTAGTGGCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAGGC < 1:640974/149‑1 AAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAGGC > 2:533629/1‑149 AAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAGGC < 1:853904/149‑1 AACAATGATTAAACAAACTATTGTCGCGTTTCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAGGCC < 1:597487/149‑1 AACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCTGCAGGAAACGTCAAGGTGTTCAGCAATGGCAGAAGTGAGGACAAAACGCTAACGGGCGCAGAACATTTAATCGAGCTGGTAGGCC > 1:289547/1‑149 ACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGCCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTCGGCCA > 1:552172/1‑149 ACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGAGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCCAAACGCTAACGGGCGCAGAGCATTTAAACGATCTGGTCGGCCA > 2:201968/1‑149 TTAAACAAACTATTGTCGTGTTGCTTTTGAGTGTGGGAGAGTCATCGGACTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGTCAGCAGTGAGGCCAAAACGCTAACGGGCGCGAAGCATCTAATCGAATTGGTAGGCCAatggcgg > 2:449847/1‑142 AACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCAGCAGGAACCGTCAAGAGGTTCATCAATGGCAGCAGGGAGGCCAGAACGCTAACGGGCGCAAAGCATTTAATCGATCTGGTAGGCCACCAccggtcg > 2:98704/1‑142 GCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAGGCCACCAGCTGTTTGCCAGCCGCGGTTGGCCTA < 2:506380/149‑1 GTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAGGCCACCAGCTGTTTGCCAGCCGCGGTTGGCCTACC > 2:755051/1‑100 GTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAGGCCACCAGCTGTTTGCCAGCCGCGGTTGGCCTACC < 1:755051/100‑1 acccGGCCACCATCTGTCTGCTAGCCGCGGTTGGGCTACCAGAC‑CTATTAAATGCTTTGCGCCAGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGCTTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAA < 2:330683/145‑1 tgtCCACCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGAT‑CGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGGTTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAAGCA < 1:157873/146‑1 tGCCAGCAGGTGTGTGCCAGCCGCGGTTGGCCTACCAGAT‑CGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGTCGGTTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAAGCAA < 2:396009/148‑1 GGCCACCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGAT‑CGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGGTTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAAGCAc < 2:516155/149‑2 GGCCACCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGAT‑CGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGGTTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAAGCAA < 1:279247/149‑1 GGCCACCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGAT‑CCATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCGTAACACCTTGACGGTTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAAGCAA < 2:222417/149‑1 GGCCACCAGCTGTTTGCCAGCCGCGGTTGGCCTACAAGAT‑CGATTAAATGCTCTGCGCCCGTTAAGGTTTTGGCCTCACTACTCCCATTGCTGAACACCTTGACGGTTCCTCCCGCGAACACCGATGACGCTCCCCCACACAACAGCca > 2:487147/1‑147 GCCACCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGAT‑CGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGGTTCCTACCGCGAAGACCGATGACGCTCCAACAACAAAAAGCAAC > 2:320497/1‑149 CCACCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGAT‑CGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAAAACCTTGACGGTTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAAGCAACG > 1:47391/1‑149 CCACCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGAT‑CGATTAAATGCTCTGCGCCCGTCAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGGTTCCTGCCCCGAAGACCGATGACGCTCCCACACTCAAAAGCAACG > 1:251170/1‑149 CCACCAGCTGTGTGCCAGCCGCGGTTGGCCTACCAGAT‑CGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGGTTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAAGCAACG < 1:644447/149‑1 CACCTGCTGTTTGCCAGCCGCGGTTGGCTTACCAGTTGTGATTGAGT‑TTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCTATTGCTGAAGACCTTGACGGTTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAAGCAACGC < 1:779716/149‑1 CACCAGCTGTTTGCTAGCCGCGGTTGGCCTACCAGAT‑CGATTAAATGCTCTGCGCCTGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGGTTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAAGCAACGC < 2:653546/149‑1 CACCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGAT‑CGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCCCTGCTGCCATTGCTGAACACCTTGACGGTTCCTGCCGCGAAGCCCGATGACGCTACCCCACCACACAGCAACGC > 2:239863/1‑149 CACCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGAT‑CGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGGTTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAAGCAACGC > 1:733341/1‑149 CACCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGAT‑CGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGGTTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAAGCAACGC < 2:455371/149‑1 CACCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGAT‑CGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGGTTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAAGCAACGC < 1:811389/149‑1 CACCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGAT‑CGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGGTTCCTGCCGCGAAGACCGATGACGCTCCCACACCCAAAAGCAACGC > 1:969285/1‑149 CACCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGAT‑CGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGGTTCCTGCC > 1:659086/1‑111 CACCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGAT‑CGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGGTTCCTGCC < 2:659086/111‑1 CACCAGCTGTTTGCCAGCCGCGGTTCGCCTACCAGAT‑CGATTAAATGCTCTGCGCCCGTTAGCGCTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGATTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAAGCAACGC < 1:906322/149‑1 ACCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGAT‑CGATTAAATGCTCTGCGCCCGTTAGCGTTTTGTCCTCACTGCTGCCAGTGCTGAACACCTTGACGGTTCCTGCCGCGAAGACCGATGACGCCCCCACACCCTAAAGAACCGCG > 2:81909/1‑149 ACCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGAT‑CGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGGTTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAAGCAACGCG > 2:837730/1‑149 CAAAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGCGGCAGGAACCGTCAAGGTGTTCAGCAATGGCAGCAGTGAGGCCAAAACGCTAACGGGCGCAGAGCATTTAATCGATCTGGTAGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_pgi/4236150‑4236302 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaCCAGCTGTTTGCCAGCCGCGGTTGGCCTACCAGAT‑CGATTAAATGCTCTGCGCCCGTTAGCGTTTTGGCCTCACTGCTGCCATTGCTGAACACCTTGACGGTTCCTGCCGCGAAGACCGATGACGCTCCCACACTCAAAAGCAACGCG < NC_000913_3_pae_pgi/4236324‑4236177 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |