New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 4244447	NA (NA)	3 (0.060)	3/258	NT	NA	noncoding (96/126 nt)	REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences
	?	NC_000913_3_pae_pgi	= 4244477	NA (NA)					noncoding (126/126 nt)	REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences

GCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGgccgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_pgi/4244300‑4244447 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGATGTCATT  <  NC_000913_3_pae_pgi/4244477‑4244324                                                                                                                                                                                                                                                                                                                GCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATTCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGG                                                                                                                                                           >  1:468415/1‑149 GCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGTCCTACATACGTCTCGGTTTTTTAGG                                                                                                                                                           >  1:983606/1‑149 GCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGG                                                                                                                                                           <  1:620670/149‑1 GCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATAAGTTTCGGTATTGTAGG                                                                                                                                                           >  1:475034/1‑149  CTTTTCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGCATTCCCTGCCCTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGC                                                                                                                                                          <  2:864757/149‑1  CTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTATCGGTTTTGTAGGC                                                                                                                                                          >  1:602802/1‑149   TTTTCCACTAATGTTTCTCTTTAATGACAGCTGTGGGGTTCTGCCTCATTCCAGGACGGATAAGGATTTCACGCCTGATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGTCCTACATACGTTTCGGTTTTGTAGGCC                                                                                                                                                         <  2:147160/149‑1   TTTGCCTCCATTGTTTCTTTTTATTGATTTCCATGGGTTTCTTCCGCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCC                                                                                                                                                         <  1:123323/149‑1   TTTGCCACTAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGAAAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCC                                                                                                                                                         <  1:397864/149‑1   TTTGCCACCAATGTTTCTTTTTAATGACATCCATGTGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCC                                                                                                                                                         <  1:337027/149‑1   TTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAGGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGTCC                                                                                                                                                         >  1:1005032/1‑149   TTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCa                                                                                                                                                         >  1:73320/1‑148   TTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCC                                                                                                                                                         >  1:836313/1‑149   TTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCC                                                                                                                                                         >  1:777382/1‑149   TTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCC                                                                                                                                                         <  1:733738/149‑1   TTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCC                                                                                                                                                         >  2:613869/1‑149   TTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCC                                                                                                                                                         <  1:152176/149‑1   TTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCC                                                                                                                                                         >  1:544085/1‑149   TTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGCCTTTGTAGGCC                                                                                                                                                         >  2:416390/1‑149   TTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCCTATCAGGCCTACATACGTTTCGGTTTTGTAGGCC                                                                                                                                                         <  2:994716/149‑1   TTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCGCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTTCCTGATGCGACGCTGACGCGTATTATCAGGCGTACATACGTTTCGGTTTTGTGGGCC                                                                                                                                                         >  1:343266/1‑149   TTTGCCACCAATGTTGCTTTTTAATGACATCCATGTGTTTCTTCCTCATTCCAGGACGGAGAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCC                                                                                                                                                         <  2:187954/149‑1    TTGCCACGAATGTTTCTTTTTAATGACATCCATGGGGTTTTTGCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAAGAATTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCG                                                                                                                                                        <  2:450382/149‑1    TTGCCACCAATGTTTGTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCG                                                                                                                                                        <  2:633964/149‑1    TTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATCCGTTTCGGTTTTGTGGGCCG                                                                                                                                                        >  2:193843/1‑149    TTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCG                                                                                                                                                        <  1:765418/149‑1    TTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCG                                                                                                                                                        <  2:623422/149‑1    TTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCG                                                                                                                                                        <  2:167720/149‑1    TTGCCACCAATGTTTCTATCTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCG                                                                                                                                                        <  1:857647/149‑1    TTGCCACCAAGGTTGTTTTCTAATGACATCCAGTGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTAGCCGACCACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCG                                                                                                                                                        <  2:581041/149‑1    TTGCCACCAACGTTTCCTTTTAATGACATCCATGGGGTTCTTCCTCATTTCAGGACGGATAAGGCTTTCACTCCTTATCCGACAACAACTGCCTGATTCGACGCTGACGCGTCGTATCAGGCCTACTTACGTTTCGGTTTTGTCGGCCG                                                                                                                                                        <  2:871913/149‑1    TTGCCAACAAGGTTTCTTTTAAATGACATCCATGGGGTTCTTCCTCATTCAAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATGCTATGCGGTTTTGTAGGCCG                                                                                                                                                        <  2:93644/149‑1      gtCACCAATGTTTGTTTGTGATGACAACCAGGGGGTTCTTCCTCATTCAAGGAGGGATAATGTTTTATCGCATTATCCGACAACAACTGCCTAATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGA                                                                                                                                                      <  2:317519/147‑1      GCCACCAATTTTGCGTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACACACGTTTCGGTTTTGTAGGCCGGA                                                                                                                                                      <  2:449471/149‑1      GCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTTTAGGCCGGA                                                                                                                                                      >  1:501615/1‑149      GCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGA                                                                                                                                                      >  2:300001/1‑149      GCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGA                                                                                                                                                      <  2:184999/149‑1        CACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGAACTGATAAAGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTCCATACGTTCGGGCTTTGTACGCCGcaca                                                                                                                                                    >  2:418845/1‑145         ACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCATGACGAATAAGGCTTTCAGGCCTTATCCGACAACAACTGCCTAATGCGACGCTGACGCGTCCTATCAGACCTCCATAAGATTCGATTTTTTAGGCAGGAaca                                                                                                                                                   >  2:585555/1‑146         ACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACACCATATAACAGTCGCTACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGATTTGTAAGCCGaaaaa                                                                                                                                                   >  1:484477/1‑144         ACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTGTTGTAGGCCGGccaa                                                                                                                                                   >  1:138075/1‑145         ACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCATCATTCCAGGACGGATAAGGCTTTCACGCTTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTGGGTTTTGTAGGCAGGccaa                                                                                                                                                   >  2:881539/1‑145           CAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGACCTACATACGTTTCGGTTTTCTAGGCCGGccccct                                                                                                                                                 >  2:1002167/1‑143                               ATCCATGGGGTTCTTCCTCATTCCAGGCAGGATAAGGCATTCACCCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGATGCGGCGTGAACGCCTTGTCCGGCC                                                                                                                             <  1:688635/149‑1                                                                   GCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACG                                                                                                              >  1:680890/1‑128                                                                   GCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACG                                                                                                              <  2:680890/128‑1                                                                        CACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGA                                                                                                                                                      <  1:496804/83‑1                                                                        CACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGA                                                                                                                                                      >  2:496804/1‑83                                                                                   CGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGA                                                                                                                                                      >  1:530524/1‑72                                                                                   CGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGA                                                                                                                                                      <  2:530524/72‑1                                                                                                                                               tgaaAGGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCA             <  2:89769/145‑1                                                                                                                                                   agaCCGGAGGCGGCGTGGACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGGGTCAGCGTCGCATCAGGCAGTTGTTTTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGA         <  2:510366/146‑1                                                                                                                                                   aaGCCGGATGCGGCGTGAAAGCCTTGTCCGGCCAACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGGCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCTTCCTGGAATGAGGAAGAACCCCATGGA         <  2:345904/147‑1                                                                                                                                                    aGCCGGATGCGGCATAAACACCTTGTCCGGCCTAAAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCCCATCAGGCAGGTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGAT        <  1:301005/148‑1                                                                                                                                                    GGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGAT        <  1:197087/149‑1                                                                                                                                                     gaCGGAGGGGGCGTGAAGGACGTGTCCGGCCTACAAAACCGTAACGGTTGTAGCCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTTGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGATG       <  2:402308/147‑1                                                                                                                                                     GCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGATG       <  2:441277/149‑1                                                                                                                                                      tCGGATGCGGTGTGAACGCCGTGTCCGGCCTACAAGACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGGCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGATGT      <  2:843479/148‑1                                                                                                                                                      tCGGATGCGCCGTGAACGCGTTGGCCGGCCTACAAAACCGAAACGTACGCAAGGGGTAGATTACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGATGT      <  1:482465/148‑1                                                                                                                                                      cctGATGCGGCGTGAACGCCTTGTCCGGGCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGATGT      <  2:444431/146‑1                                                                                                                                                      cctGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGATGT      <  1:234803/146‑1                                                                                                                                                      CCGGATGCGGCGTGCACGCCTCGTCCGGCCTACAAAACCGAAACCTATGTACGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGATGT      <  2:16865/149‑1                                                                                                                                                      CCGGATGCGGCGTGAACGCCTTGTCCTGTCTACAAAACTGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGGATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGATGT      <  1:548852/149‑1                                                                                                                                                      CCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGATGT      >  1:280122/1‑149                                                                                                                                                      CCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGATGT      <  2:771023/149‑1                                                                                                                                                      CCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTAACCGACCTGGAATGAGGAAGAAACCCATAGATGc      >  1:141495/1‑148                                                                                                                                                      CCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGACGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCCAGGATGT      >  2:942698/1‑149                                                                                                                                                      CCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGAATAAGGCAGGAAAACCTTATCGGTCCTGGAATGAGGAAGAACCCCATGGATGg      >  1:588129/1‑148                                                                                                                                                      CCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGACTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAAACCCATGGATGT      >  1:659191/1‑149                                                                                                                                                       CGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAACCGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCATTTGTTGTCGGATAAGGCGTTAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGATGTC     <  1:80642/149‑1                                                                                                                                                       CGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGATGTC     >  1:73267/1‑149                                                                                                                                                       CGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGACGTGAAAACCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGATGTC     >  1:379454/1‑149                                                                                                                                                       CGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGATGTC     >  2:755347/1‑149                                                                                                                                                       CGGATGCGCCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATATAGGCCTGAAAAGCCGCGACAGCGTCGCATCCACCAGTTGTTGTCGGATAAGGCGAGAAGGCCTTATCTATCCTGGAATGAGGAAGAACCCCCTGGAgctc     >  2:417712/1‑145                                                                                                                                                       CGGATGCAGCTGTAACGCCTTGCCCGGCCTACAAATCCGAAACGCATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTTGGATAAGGCGTGAAAGCCGTATCCGTCCTGGAATGAGGAAGAACCCCATGGATGTC     <  1:488816/149‑1                                                                                                                                                       CGGAGGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGGAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGATGTC     <  1:853561/149‑1                                                                                                                                                        gtATGCGGCGGTAACGGCTTGTCCGGTCTACCACACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTTGGATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCTTCCTGGAATGAGGAAGAACCCCATGGATGTCA    <  1:256867/147‑1                                                                                                                                                        GGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACTTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGATGTCA    <  1:249518/149‑1                                                                                                                                                        GGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTTTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGATGTCA    <  1:643216/149‑1                                                                                                                                                        GGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGATGTCA    <  1:46140/149‑1                                                                                                                                                        GGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGATGTCA    <  1:51269/149‑1                                                                                                                                                        GGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGATGTCA    <  2:44797/149‑1                                                                                                                                                        GGATGCGGCCTGTACGCCTTGTCCTGCCTGCAAAACTGAGACGTATGTTGGCCTGATAAGACGCGTCAACGTCCCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGCCCTGGAATGAGGAAGAACCCCATGGATGTCA    <  1:377688/149‑1                                                                                                                                                        GGAGGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGATGTCA    <  2:297980/149‑1                                                                                                                                                        GGAAGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGATGTCA    <  1:970566/149‑1                                                                                                                                                         GATGCGGCGTGAACGCCTTGTCCGGCCTACAACACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGATGTCAT   <  1:613642/149‑1                                                                                                                                                         GATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGATGTCAT   <  2:871843/149‑1                                                                                                                                                         GATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGATGTCAT   <  1:67930/149‑1                                                                                                                                                         GATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGATGTCAT   >  2:328968/1‑149                                                                                                                                                         GATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGAATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGATGTCAT   >  2:850630/1‑149                                                                                                                                                          ATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAACCGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGATGTCATT  <  2:518767/149‑1                                                                                                                                                          ATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCCGCGTCGGATCAGGCAGTTGTTGTCGGATAAGGCGTGAAGGGCTTAGTGGTCCTGGAATGGGGAAGAAGTCCATGGATGTCATT  >  1:17907/1‑149                                                                                                                                                          ATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGATGTCATT  <  1:825570/149‑1                                                                                                                                                          ATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGATGTCATT  <  2:314800/149‑1                                                                                                                                                          ATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGGATGTAGGCCTGATAAGACGCGTAAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCAACGATGTCATT  >  2:620383/1‑149                                                                                                                                                                                                                                                                                                                GCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGgccgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_pgi/4244300‑4244447 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCAGTTGTTGTCGGATAAGGCGTGAAAGCCTTATCCGTCCTGGAATGAGGAAGAACCCCATGGATGTCATT  <  NC_000913_3_pae_pgi/4244477‑4244324

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.