New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_pgi 4218558 =65 (1.230)10 (0.190)
+A
9/268 NT 13.4% noncoding (123/132 nt) REP311 (repetitive extragenic palindromic) element; contains 3 REP sequences REP311 (repetitive extragenic palindromic) element; contains 3 REP sequences
?NC_000913_3_pae_pgi = 4253279 NA (NA)noncoding (119/130 nt) RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site

GTTCGAAACGCTGCTGCGCACCGGAGGTCACTTCGAGGAATCGACCATACTGAGCATCGAAGCCTTGCAAAATGGTTTGAGCAATCAATAATTCCAGGCCACGCGGCATTTAGCGCCCTCATCAGGAGCAGAGAATTGCCGGATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_pgi/4218704‑4218558
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGAAAACGCCTTATCCGGCCTTCCATAATCTGCAAATTCAATAAATTGCGATGTGTTGTGTAGGCCTGAGAAGCGCCGCGCATCAGGCAACCCAGAAGAAAGCCGGATGATCATCCGGCTT  <  NC_000913_3_pae_pgi/4253279‑4253159
                                                                                                                                                   |                                                                                                                         
GTTCGAAACGCTGCTGCGCACCGGAGGTCACTTCGAGGAATCGACCATACTGAGCATCGAAGCCTTGCAAAATGGTTTGAGCAATAAATAATTCCAGGCCACGCGGCATTAAGCGCCCTCATCAGGAGCAGAGAATTGCAGGATACGAC                                                                                                                          >  2:351746/1‑149
GTTCGAAACGCTGCTGCGCACCGGAGGTCACTTCGAGGAATCGACCATACTGAGCATCGAAGCCTTGCAAAATGGTTTAAGCAATCAATAATTCCAGGCCACGCGGCATTTCGCGCCCTCATCAGGAGAAGAGAATTGCCGAATGCGAC                                                                                                                          >  1:464522/1‑149
 TTCGAAACGCTGCTGCGCACCGGAGGTCACTTCGAGGAATCGACCATACTGAGCATCGAAGCCTTGCAAAATGGTTTGAGCAATCAATAATTCCAGGCCACGCGGCATTTAGCGCCCTCATCAGGAGCAGAGAATTGCCGGATGCGACG                                                                                                                         >  1:596761/1‑149
 TTCGAAACGCTGCTGCGCACCGGAGGTCACTTCGAGGAATCAACCATACTGAGCATCGAAGCCTTGCAAACTGGTTTGAGCAATCAATAATTCCAGGCCACGCGGCATTTAGCGCCCTCATCAGGCGCAGAGAATTGCCGGATGCGACc                                                                                                                         >  2:838013/1‑148
    GAAACGCTGCTGCGCACCGGAGGTCACTTCGAGGAATCGACCATACTGAGCATCGAAGCCTTGCAAAATGGTTTGAGCAATCAATAATTCCAGGCCACGCGGCATTTAGCGCCCTCATCAGGAGCAGAGAATTGCCAGATGAGACGAAA                                                                                                                      >  1:368640/1‑149
                          GTCACTTCGAGGAATCGACCATACTGAGCATCGAAGCCTTGCAAAATGGTTTGAGCAATCAATAATTCCAGGCCACGCGGCATTTAGCGCCCTCATCAGAAGCAGAGAATTGCCGGATGCGACGAAAACGCCTTATCCGGCCTCCCATA                                                                                                >  2:355243/1‑149
                                  GAGGAATCGACCATACTGAGCATCGAAGCCTTGCAAAATGGTTTGAGCGATCAATAATTCCAGACCACGCGGCATTTAGCTCCCTCATCAGGAGCAGAGAATTGCCGGATGCGACGAAAACGCCTTTTCCGTCCTTCCATAATCTTCAA                                                                                        >  1:883423/1‑149
                                        TCGACCATACTGAGCATCGAAGCCTTGCAAAATGGTTTGAGCAATCAATAATTCCAGGCCACCCGGCATGTAGCGCCCTCATCAGGAGCAGAGAATTCCCGGATGCGACCAAAACGCCTTATCCGGCCTTCCATAATCTCCAAATTCAc                                                                                  >  2:445670/1‑148
                                        TCGACCATACTGAGCATCGAAGCCTTGCAAAATGGTTTGAGCAAGCAATAATTCCAGGCCACGCGACATTTAGCTCCCTCATCAGGAGCAGAGAATAGCCGGATGCGACGAAACCGCCTTATCCGGCCTTCAATAATCTCCAAATTCAc                                                                                  >  2:308067/1‑148
                                                        TCGAAGCCTTGCAAAATGGTTTGAGCAATCAATAATTCCAGGCCACGCGGCATTTAGCGCCCTCATCAGGAGCAGAGAATTGCCGGATGCGACGAAAAAACCTTATCCGGCCTTCCATAATCTGAAAATTCAATAAATTGCCATGTGTT                                                                  >  1:126763/1‑149
                                                                           TTTGAGCAATCAATAATTCCAGGCCACGCGGCATTTAGCGCCCTCATCAGGAGCAGAGAATTGCCGGATGCGACGAAAACGCCTTATCCGGCCTTCCATAATATGAAAATTCAATAAATTACGATGTGTTGTGTAGGCCTGAGAAGCGC                                               >  1:601458/1‑149
                                                                              GAGCAATCAAGAATTCCAGGCCACGCGGCATTGAGCGCCCTCATCAGGAGCAGAGAATTGCAAAAAAAAAAAAAAACGCCTTATCCGGCCTTCCATAATCTGCAAATTCAATAAATTGCGATGTGTTGTGTAGGCCTGAGAAGCGCCGC                                            <  2:236251/149‑1
                                                                                           TTCCAGGCCACGCGGCATTTAGCGCCCTCATCAGGAGCAGAGAATTGCCGGATGCGACGAAAACGCCTTATCCGACCTTCCATAAACTGCAAATTCAATAAATTGCGATGTGTTGTGTAGGCCTGAGGAGCGCCGCGCATCAGGCAACC                               >  1:252161/1‑149
                                                                                                GGCCACGCGGCATTTAGCGCCCTCATCAGGAGCAGAGAATTGCCGGAAGCGACGAAAACGCCTTATCCGGCCTTCCATAATCTGCAAATTCAATAAATTGCGATGTGTTGTATAGGCCTGAGAAGCGCCGCGCATCAGGCAACCCAGAA                          >  2:634208/1‑149
                                                                                                                        agCAGGGGCAGAGAATTGCCGGATGCGACGAAAACGCCTTATCCGGCCTTCCATAATCTGCAAATTCGATAAATTGCGATGTGTTGTGTAGGCCTGAGAAGCGCCGCGCATCAGGCAACCCAGAAGAAAGCCGGATGATCATCCGGCTT  <  2:24847/147‑1
                                                                                                                                                   |                                                                                                                         
GTTCGAAACGCTGCTGCGCACCGGAGGTCACTTCGAGGAATCGACCATACTGAGCATCGAAGCCTTGCAAAATGGTTTGAGCAATCAATAATTCCAGGCCACGCGGCATTTAGCGCCCTCATCAGGAGCAGAGAATTGCCGGATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_pgi/4218704‑4218558
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGAAAACGCCTTATCCGGCCTTCCATAATCTGCAAATTCAATAAATTGCGATGTGTTGTGTAGGCCTGAGAAGCGCCGCGCATCAGGCAACCCAGAAGAAAGCCGGATGATCATCCGGCTT  <  NC_000913_3_pae_pgi/4253279‑4253159

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.