| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | 4218558 = | 65 (1.230) | 10 (0.190) +A |
9/268 | NT | 13.4% | noncoding (123/132 nt) | REP311 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP311 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913_3_pae_pgi | = 4253279 | NA (NA) | noncoding (119/130 nt) | RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
GTTCGAAACGCTGCTGCGCACCGGAGGTCACTTCGAGGAATCGACCATACTGAGCATCGAAGCCTTGCAAAATGGTTTGAGCAATCAATAATTCCAGGCCACGCGGCATTTAGCGCCCTCATCAGGAGCAGAGAATTGCCGGATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_pgi/4218704‑4218558‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGAAAACGCCTTATCCGGCCTTCCATAATCTGCAAATTCAATAAATTGCGATGTGTTGTGTAGGCCTGAGAAGCGCCGCGCATCAGGCAACCCAGAAGAAAGCCGGATGATCATCCGGCTT < NC_000913_3_pae_pgi/4253279‑4253159 | GTTCGAAACGCTGCTGCGCACCGGAGGTCACTTCGAGGAATCGACCATACTGAGCATCGAAGCCTTGCAAAATGGTTTGAGCAATAAATAATTCCAGGCCACGCGGCATTAAGCGCCCTCATCAGGAGCAGAGAATTGCAGGATACGAC > 2:351746/1‑149GTTCGAAACGCTGCTGCGCACCGGAGGTCACTTCGAGGAATCGACCATACTGAGCATCGAAGCCTTGCAAAATGGTTTAAGCAATCAATAATTCCAGGCCACGCGGCATTTCGCGCCCTCATCAGGAGAAGAGAATTGCCGAATGCGAC > 1:464522/1‑149 TTCGAAACGCTGCTGCGCACCGGAGGTCACTTCGAGGAATCGACCATACTGAGCATCGAAGCCTTGCAAAATGGTTTGAGCAATCAATAATTCCAGGCCACGCGGCATTTAGCGCCCTCATCAGGAGCAGAGAATTGCCGGATGCGACG > 1:596761/1‑149 TTCGAAACGCTGCTGCGCACCGGAGGTCACTTCGAGGAATCAACCATACTGAGCATCGAAGCCTTGCAAACTGGTTTGAGCAATCAATAATTCCAGGCCACGCGGCATTTAGCGCCCTCATCAGGCGCAGAGAATTGCCGGATGCGACc > 2:838013/1‑148 GAAACGCTGCTGCGCACCGGAGGTCACTTCGAGGAATCGACCATACTGAGCATCGAAGCCTTGCAAAATGGTTTGAGCAATCAATAATTCCAGGCCACGCGGCATTTAGCGCCCTCATCAGGAGCAGAGAATTGCCAGATGAGACGAAA > 1:368640/1‑149 GTCACTTCGAGGAATCGACCATACTGAGCATCGAAGCCTTGCAAAATGGTTTGAGCAATCAATAATTCCAGGCCACGCGGCATTTAGCGCCCTCATCAGAAGCAGAGAATTGCCGGATGCGACGAAAACGCCTTATCCGGCCTCCCATA > 2:355243/1‑149 GAGGAATCGACCATACTGAGCATCGAAGCCTTGCAAAATGGTTTGAGCGATCAATAATTCCAGACCACGCGGCATTTAGCTCCCTCATCAGGAGCAGAGAATTGCCGGATGCGACGAAAACGCCTTTTCCGTCCTTCCATAATCTTCAA > 1:883423/1‑149 TCGACCATACTGAGCATCGAAGCCTTGCAAAATGGTTTGAGCAATCAATAATTCCAGGCCACCCGGCATGTAGCGCCCTCATCAGGAGCAGAGAATTCCCGGATGCGACCAAAACGCCTTATCCGGCCTTCCATAATCTCCAAATTCAc > 2:445670/1‑148 TCGACCATACTGAGCATCGAAGCCTTGCAAAATGGTTTGAGCAAGCAATAATTCCAGGCCACGCGACATTTAGCTCCCTCATCAGGAGCAGAGAATAGCCGGATGCGACGAAACCGCCTTATCCGGCCTTCAATAATCTCCAAATTCAc > 2:308067/1‑148 TCGAAGCCTTGCAAAATGGTTTGAGCAATCAATAATTCCAGGCCACGCGGCATTTAGCGCCCTCATCAGGAGCAGAGAATTGCCGGATGCGACGAAAAAACCTTATCCGGCCTTCCATAATCTGAAAATTCAATAAATTGCCATGTGTT > 1:126763/1‑149 TTTGAGCAATCAATAATTCCAGGCCACGCGGCATTTAGCGCCCTCATCAGGAGCAGAGAATTGCCGGATGCGACGAAAACGCCTTATCCGGCCTTCCATAATATGAAAATTCAATAAATTACGATGTGTTGTGTAGGCCTGAGAAGCGC > 1:601458/1‑149 GAGCAATCAAGAATTCCAGGCCACGCGGCATTGAGCGCCCTCATCAGGAGCAGAGAATTGCAAAAAAAAAAAAAAACGCCTTATCCGGCCTTCCATAATCTGCAAATTCAATAAATTGCGATGTGTTGTGTAGGCCTGAGAAGCGCCGC < 2:236251/149‑1 TTCCAGGCCACGCGGCATTTAGCGCCCTCATCAGGAGCAGAGAATTGCCGGATGCGACGAAAACGCCTTATCCGACCTTCCATAAACTGCAAATTCAATAAATTGCGATGTGTTGTGTAGGCCTGAGGAGCGCCGCGCATCAGGCAACC > 1:252161/1‑149 GGCCACGCGGCATTTAGCGCCCTCATCAGGAGCAGAGAATTGCCGGAAGCGACGAAAACGCCTTATCCGGCCTTCCATAATCTGCAAATTCAATAAATTGCGATGTGTTGTATAGGCCTGAGAAGCGCCGCGCATCAGGCAACCCAGAA > 2:634208/1‑149 agCAGGGGCAGAGAATTGCCGGATGCGACGAAAACGCCTTATCCGGCCTTCCATAATCTGCAAATTCGATAAATTGCGATGTGTTGTGTAGGCCTGAGAAGCGCCGCGCATCAGGCAACCCAGAAGAAAGCCGGATGATCATCCGGCTT < 2:24847/147‑1 | GTTCGAAACGCTGCTGCGCACCGGAGGTCACTTCGAGGAATCGACCATACTGAGCATCGAAGCCTTGCAAAATGGTTTGAGCAATCAATAATTCCAGGCCACGCGGCATTTAGCGCCCTCATCAGGAGCAGAGAATTGCCGGATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_pgi/4218704‑4218558‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGAAAACGCCTTATCCGGCCTTCCATAATCTGCAAATTCAATAAATTGCGATGTGTTGTGTAGGCCTGAGAAGCGCCGCGCATCAGGCAACCCAGAAGAAAGCCGGATGATCATCCGGCTT < NC_000913_3_pae_pgi/4253279‑4253159 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |