New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_pgi = 4226596881 (16.630)3 (0.060) 3/256 NT 0.35% coding (2769/3684 nt) metH homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent
?NC_000913_3_pae_pgi = 4226613 873 (17.390)coding (2786/3684 nt) metH homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent
Rejected: Frequency below/above cutoff threshold.

Only 100 of 1078 total aligned reads displayed.

CCCAGCGTGATGATTTTGTCGCTCGTACCCGCAAGGAGTACGAAACCGTACGTATTCAGCACGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATCCGCGCATTCTGGAAGATGAAGTGGTGGGCGTTGAGG  >  NC_000913_3_pae_pgi/4226448‑4226744
                                                                                                                                                    |                                                                                                                                                     
cccAGCGTTGTTATTTTGTCGCTCGTACCCGAAATGAGTACGAAACCGTACGTATTCAGCACGGTCGCAAGAAACCTCGCACACCACCGGTCCCGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGATTGGCAGGCTTACACGCCG                                                                                                                                                       <  2:72407‑M1/149‑1 (MQ=255)
  cAGCGTGATGATTTTGTCGCTCGTACCCGCAAGGAGTACGAAACCGTACGTATTCAGCACGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACgccgcc                                                                                                                                                     >  1:501756/1‑149 (MQ=255)
   agggTGATGATTTCGTCGCTCGTCCCCGCAAGGAGTACGAAACCGTACGTATTCAGCCCGGGCGCAAGAAACCGCGCATACCACCGGACACCCTGGAATCGGCGCGCGATAACGATTTCTCTTTTGACTGGCAGGCTTACACGccgccg                                                                                                                                                    <  1:848298/146‑1 (MQ=255)
   aGCGTGATGATTTTGTCGCTCGTACCCGCAAGGAGTACGAAACCGTACGTATTCAGCACGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGccgccg                                                                                                                                                    >  1:441094/1‑149 (MQ=255)
    gCGTGATGATTTTGTCGCTCGTACCCGCAAGGAGTACGAAACCGTACGTATTCAGCACGGGCGCAAGAAACCGCGCACACCACAGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCATGCTTACACGCCGCCgg                                                                                                                                                   >  1:308839/1‑149 (MQ=255)
      gTGATGATTTTGGCGCTCGTACCCGCAAGGAGTACGAAACCGTACGTATTCAGCACGGGCGCAAGCAACCGCGAACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTg                                                                                                                                                 <  2:1535/149‑1 (MQ=255)
       tgatgaTTTTGTCGCTCGTACCCGCAAGGAGTACGAAACCGTACGTATTCAGCACGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCCTACACGCCGCCGGTgg                                                                                                                                                >  1:832209/1‑149 (MQ=255)
        gatgatTTTGTCGCTCGTACCCGCAAGGAGTACGAAACCGTACGTATTCAGCACGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGgc                                                                                                                                               <  1:916683/149‑1 (MQ=255)
           gatTTTGTCGCTCGTACCCGCAAGGAGTACGAAACCGTACGTATTCAGCTTGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGGGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCa                                                                                                                                            <  1:456248/149‑1 (MQ=255)
            atTTTGTCGCTCGTACCCGCAAGGAGTACGAAACCGTACGTATTCAGCACGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCAc                                                                                                                                           >  1:974178/1‑149 (MQ=255)
             ttttGTCGCTCGTACCCGCAAGGAGTACGAAACCGTACGTATTCAGCACGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCAcc                                                                                                                                          <  1:881258/149‑1 (MQ=255)
              tttGTCGCTCGTACCCGCAAGGAGTACGAAACCGTACGTATTCAGCACGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTAGAAGCGGCGCGCGATAACAATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCg                                                                                                                                         >  1:268340/1‑149 (MQ=255)
                  tCGCTCGTACCCGCAAGGAGTACGAAACCGTACGTATTCAGCACGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTCGAAGCGGCGGGCGCCAACTATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTc                                                                                                                                    <  1:693510‑M2/149‑2 (MQ=255)
                     cTCGTACCCGCAAGGAGTACGAAACCGTACGTATTCAGCACGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTcggc                                                                                                                                 <  1:322640‑M2/149‑5 (MQ=255)
                     cTCGTACCCGCAAGGAGTACGAAACCGTACGTATTCAGCACGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTcggc                                                                                                                                 <  1:124095‑M2/149‑5 (MQ=255)
                     cTCGTACCCGCAAGGAGTACGAAACCGTACGTATTCAGCACGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTcggc                                                                                                                                 <  2:319235‑M2/149‑5 (MQ=255)
                      tCGTACCCGCAAGGAGTACGAAACCGTACGTATTCAGCACGGGCGCAAGAAACCGCGCACACCACCGGTCCCGCTGGAAGCGGCGCGCGTTAACGATTCCGCTTTTTACCGGCACGCTTACACCCCCCCGGCGGCGCACCGT‑CCcggca                                                                                                                                <  2:89604‑M2/149‑6 (MQ=255)
                        gTACCCGCAAGGAGTACGAAACCGTACGTATTCAGCACGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCGGGCTTACACACCGCAGGTGGCGCACCGT‑CTcgtcggg                                                                                                                              <  2:851204‑M2/149‑8 (MQ=255)
                        gTACCCGCAAGGAGTACGAAACCGTACGTATTCAGCACGGGCGCAAGAAACCGCACACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGAAGGCATACACGCCGCCGGTGGCGCAGCGT‑CTcggcgtg                                                                                                                              <  2:557704‑M2/149‑8 (MQ=255)
                         tACCCGCAAGGAGTACGAAACCGTACGTATTCAGCACGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CCCGGCGTGc                                                                                                                             >  1:1000682/1‑149 (MQ=255)
                            ccGCAAGGAGTACGGAACCGTACGGATTCAGCACGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAgg                                                                                                                          >  1:868131/1‑149 (MQ=255)
                              gCAAGGAGTACGAAACCGTACGTATTCAGCACGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTcggcgtggaggca                                                                                                                        <  2:615781‑M2/149‑14 (MQ=255)
                              gCAAGGAGTACGAAACCGTACGTATTCAGCACGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGaa                                                                                                                        <  1:789391/149‑1 (MQ=255)
                               cAAGGAGTACGAAACCGTACGTATTCAGCACGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAg                                                                                                                       <  2:498604/149‑1 (MQ=255)
                                   gAGTACGAAACCGTACGTATTCAGCACGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTcg                                                                                                                                   >  1:182096‑M2/1‑131 (MQ=255)
                                   gAGTACGAAACCGTACGTATTCAGCACGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGa                                                                                                                   >  2:534963/1‑149 (MQ=255)
                                    aGTACGGAACCGTACGTATGCAGCACCGGCGCAAGAAACCGCGCACACCACCGGTCACGCGGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGaa                                                                                                                  <  2:543634/149‑1 (MQ=255)
                                    aGTACGAAACCGTACGTATTCAGCACGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGaa                                                                                                                  >  1:766305/1‑149 (MQ=255)
                                        cGAAACCGTACGTATTCAGCACGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCa                                                                                                              <  1:666777/149‑1 (MQ=255)
                                        cGAAACCGTACGTATTCAGCACGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCa                                                                                                              >  1:295652/1‑149 (MQ=255)
                                        cGAAACCGTACGTATTCAGAACGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGCTTACGCTTTTGACTGTCAGGCTTACACGCCGTCGGTGGGGCACCGT‑CTCTGCGTTCAGGAAGTCGAAGCCa                                                                                                              <  2:785155/149‑1 (MQ=255)
                                         gAACCCGTACGTATTCAGCACGGGCGCAAGAACCCGCGCACACCACCGGTAACGCTGGAACCGGCGCGCTATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAg                                                                                                             <  2:361546/149‑1 (MQ=255)
                                         gAAACCGTACGTATTCAGCACGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACCGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAg                                                                                                             <  1:704612/149‑1 (MQ=255)
                                         gAAACCGTACGTATTCAGCACGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACAATTTCGCATTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAg                                                                                                             >  1:359456/1‑149 (MQ=255)
                                             ccGTACGTATTCAGCACGGGCGCAAGAAACCGTGTACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATc                                                                                                         <  1:346598/149‑1 (MQ=255)
                                               gtacgtaGTCAGCACGGGCGCAAGAAACCGCGTACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGa                                                                                                       <  1:104049/149‑1 (MQ=255)
                                                      ttCAGCACGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACAcgccgc                                                                                                                                                      >  2:960052/1‑96 (MQ=255)
                                                      ttCAGCACGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCAcc                                                                                                                                          >  1:53544/1‑108 (MQ=255)
                                                      ttCAGCACGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTg                                                                                                >  2:243624/1‑149 (MQ=255)
                                                       tCAGCACGGGCGCAAGAAACCGCGCACACCACCTGTCACGCTGGAAGCGGCGCGCGATAACGAGTTCGCTTTTTACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGc                                                                                               <  1:254336/149‑1 (MQ=255)
                                                       tCAGCACGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCGGCCGGAGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCGGCATCGAAACGcgcc                                                                                               >  2:810976/1‑146 (MQ=255)
                                                           cACGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTaa                                                                                           >  1:718924/1‑149 (MQ=255)
                                                              gggCGCAAGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTa                                                                                        <  1:806553/149‑1 (MQ=255)
                                                                  gcAAGAATCCACGCACACCACCGGTCACTCTGGAATCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATc                                                                                    <  1:932254/149‑1 (MQ=255)
                                                                    aaGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGa                                                                                  >  2:598432/1‑149 (MQ=255)
                                                                    aaGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACACTGCGTAATTACATcaa                                                                                  >  1:170350/1‑147 (MQ=255)
                                                                    aaGAAACCGCGCACACCACCGGGCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGCAGCCAGCATCGAAACGCTGCGTAATTACATCGa                                                                                  >  1:649856/1‑149 (MQ=255)
                                                                           cgcgCCCACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGTCTTACGCGCCGCCGGTGGCGCACCGT‑CGCGGCGTGCAGGAAGTCGAAGCCAGCATCCGAACCCCGCGCAATTACATCCACTGcaca                                                                           >  2:137651/1‑149 (MQ=255)
                                                                           cgcgCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGaca                                                                           >  1:597310/1‑149 (MQ=255)
                                                                            gcgcACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGacac                                                                          >  2:697083/1‑149 (MQ=255)
                                                                            gcgcACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTATTGACTGGCAAGCTTACACGCCGCCGGTGCCGCACCGT‑CGCGGCGTGCAGGAAGGCGAAGCCAGCAGCGAAAAGCTGCGTAATTACATCCACTGCacac                                                                          >  2:927275/1‑149 (MQ=255)
                                                                              gcACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCg                                                                        >  1:609942/1‑149 (MQ=255)
                                                                               cacaCCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGCCTGGACACCGt                                                                       <  1:631000/149‑1 (MQ=255)
                                                                                  accaccGGTCACGCTGGAAGCGGCGCGCGATAACGCTTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGG‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCt                                                                    <  1:225288/149‑1 (MQ=255)
                                                                                    caccGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGTTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGGGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCttt                                                                  <  1:546433/149‑1 (MQ=255)
                                                                                    caccGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCttt                                                                  >  2:983993/1‑149 (MQ=255)
                                                                                    caccGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCttt                                                                  <  1:854802/149‑1 (MQ=255)
                                                                                    caccGGTCACGCGGGAAGCGGGGCGCGATGACGATTTCGCTTGTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAGGCCAGCATCGAAAAGCGGCGTAATTACAGCAACCGGACACCGTGCtgt                                                                  >  2:586079/1‑147 (MQ=255)
                                                                                      ccGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTAt                                                                <  2:767787/149‑1 (MQ=255)
                                                                                        ggTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGa                                                              <  2:342455/149‑1 (MQ=255)
                                                                                         gTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGAc                                                             <  1:425815/149‑1 (MQ=255)
                                                                                             cGCTGGAAGCGGCGCGAGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGTCGCCGGTGGCGCACCGG‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTgg                                                         <  1:468012/149‑1 (MQ=255)
                                                                                              gCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGAcc                                                            >  2:1691/1‑145 (MQ=255)
                                                                                              gCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCAACTGGACACCGTTCTTTATGACCTGGt                                                        >  1:417520/1‑149 (MQ=255)
                                                                                               cTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGCAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGta                                                       >  1:557528/1‑148 (MQ=255)
                                                                                                tGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGGCTGGACACCGTTCTTTATGACCTGGTCg                                                      >  1:992828/1‑149 (MQ=255)
                                                                                                tGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGtag                                                      >  2:40718/1‑147 (MQ=255)
                                                                                                   aaGCGGCGGGCGAGAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTg                                                   <  2:383038/149‑1 (MQ=255)
                                                                                                      cggcgCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGcc                                                >  1:956062/1‑149 (MQ=255)
                                                                                                          gcgcgATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGc                                                     >  1:52022/1‑140 (MQ=255)
                                                                                                           cgcgATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGTATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGaa                                           <  1:335516/149‑1 (MQ=255)
                                                                                                           cgcgATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGaa                                           <  1:573841/149‑1 (MQ=255)
                                                                                                           cgcgATAACGATTGCGCTTTTGACGGGCAGGCTTACACGCCGCGGGTGGCGAACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTGTATGACCTGGTCTCTGGCCGGGaa                                           <  2:196844/149‑1 (MQ=255)
                                                                                                             cgATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGACACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGt                                         <  1:89739/149‑1 (MQ=255)
                                                                                                                tAACGACTTCCCTCTCGACCGGCAGGCTTCCCCCCCGCCCGCCGCACACCGG‑CTCGGCGCGCAGGAAGTCGAAGCCAGCACCGACACGCTGAGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATc                                      <  2:516323/149‑1 (MQ=255)
                                                                                                                 aaCGATTTCGGTTTTTACTTGCAGGCTTTCACGTTGCCTTTTGCTCACCGG‑CTCGGTGTGCAGGAAGTCGAAGCGAGCATCGAAACGCTGCGTAATTACAGCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATcc                                     <  1:205912/149‑1 (MQ=255)
                                                                                                                   cGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAATGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATCcgc                                   <  2:749236/149‑1 (MQ=255)
                                                                                                                   cGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATCcgc                                   >  1:375131/1‑149 (MQ=255)
                                                                                                                       gtCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATCCGCGCAt                               <  1:398353/148‑1 (MQ=255)
                                                                                                                         cGCTTTTGACTGGCAGGCTTACACGCCCCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATGGCCTGGACACCGTTCTTTATCCCCTGGTCGCTGGCCGTGAAGTATGCTAGCAttt                             >  1:158450/1‑148 (MQ=255)
                                                                                                                            ttttGGCTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAACCGCTGCGTAATTACATCGACTGGACACCATTCTATATGACCTGCCCGCTGACCGGGAAGTATCCGCGCATTCTgg                          >  2:870934/1‑149 (MQ=255)
                                                                                                                              ttGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATCCGCGCATTCTGGaa                        <  2:945958/149‑1 (MQ=255)
                                                                                                                                gACGGGCTGGCTTAGACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATCCGCGCATTCTGGAAGa                      <  2:676293/149‑1 (MQ=255)
                                                                                                                                   tGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATCCGCGCATTCTGAAAgttca                   >  2:455625/1‑145 (MQ=255)
                                                                                                                                     gCAGGCTTACACGCCGCCGGTGGCGCACCGT‑GTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATCCGCGCATTCTGGAAGATGAAg                 <  2:290676/149‑1 (MQ=255)
                                                                                                                                     gCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGGGTGGACACCGTCCTTTATGACCTGGTCGCTGGCCGGGAAGTATCCGCGCATTCTGGAAGATGAAg                 >  1:736287/1‑149 (MQ=255)
                                                                                                                                     gCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGa                                                                             >  2:435609/1‑89 (MQ=255)
                                                                                                                                        ggCTTACAGGCCGCCGGGGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAGGTTAGCGCTGAAACGACGTGTAATTACATCGGCTGGACACGGTTCTTTATGACATGATCGCTGGCCGGGGAATGTGCGCGCATTCTGGAGGAGGACgtgt              >  2:115429/1‑148 (MQ=255)
                                                                                                                                          cTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATTCGCGCATTCTGGAAGATGAAgtggtg            <  2:660176/149‑1 (MQ=255)
                                                                                                                                          cTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATCCGCGCATTCTGGAAGATGAAgtggtg            <  1:243624/149‑1 (MQ=255)
                                                                                                                                           ctACACGCCGGCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACCTCGACTGGACACCGTTCTTGATGACCTGGTCGCTGGCCGGGAAGTATCCGCGCATTCTGGAAGATGAAGtggtgg           <  2:916203/148‑1 (MQ=255)
                                                                                                                                             acacGCCGCCGGTGGCGCACCGG‑CCCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATCCGCGCATTCTGGAAGATGAAGTGGTGGGc         <  1:48769/149‑1 (MQ=255)
                                                                                                                                               acGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATCCGCGCATTCTGGAAGATGAAGTGGTGGGCGt       <  2:258736/149‑1 (MQ=255)
                                                                                                                                                cgccgcCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAGACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATCCGCGCATTCTGGAAGATGAAGTGGTGGGCGtt      >  2:224504/1‑149 (MQ=255)
                                                                                                                                                cgccgcCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACTCCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATCCGCGCATTCTGGAAGATGAAGTGGTGGGCGtt      <  1:275591/149‑1 (MQ=255)
                                                                                                                                                  cggccgGGTGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATCCGCGCATTCTGGAAGATGAAGTGGTGGGCGTTGa    <  2:843165/147‑1 (MQ=255)
                                                                                                                                                   cgccgGTGGCGCACCGTACTTTGCGT‑CATTAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATCCGCGCATTCTGGAAGATGAAGTGGTGGGCGTTGAg   <  2:708667/149‑1 (MQ=255)
                                                                                                                                                   cgccgGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGTTGGCCGGGAAGTATCCGCGCATTCTGGAAGATGAAGTGGTGGGCGTTGAg   <  1:136564/149‑1 (MQ=255)
                                                                                                                                                    gccgGGGTCGCACCGC‑GTCGGCGTGCAGGAAGTCGAAGCTAGCAGCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATCCGCGCATTCTGGAAGATGAAGTGGTGGGCGTTGAgg  <  2:18287/149‑1 (MQ=255)
                                                                                                                                                    gagacggtgcgccaccggcggcgtgtaagcctgccagtcaaaagcgaaatcgttatcgcgcgccgcttccagcgtgaccggtggtgtgcgcggtttcttgcgcccgtgctgaatacgtacggtttcgtactccttgcgggtacgagcga   >  2:473600‑M1/1‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                     
CCCAGCGTGATGATTTTGTCGCTCGTACCCGCAAGGAGTACGAAACCGTACGTATTCAGCACGGGCGCAAGAAACCGCGCACACCACCGGTCACGCTGGAAGCGGCGCGCGATAACGATTTCGCTTTTGACTGGCAGGCTTACACGCCGCCGGTGGCGCACCGT‑CTCGGCGTGCAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATCCGCGCATTCTGGAAGATGAAGTGGTGGGCGTTGAGG  >  NC_000913_3_pae_pgi/4226448‑4226744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.