New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_pgi 4239000 =933 (17.610)4 (0.080) 4/248 NT 0.46% intergenic (+10/+37) yjbH/yjbT DUF940 family extracellular polysaccharide protein/putative periplasmic protein
?NC_000913_3_pae_pgi 4239032 = 869 (17.870)intergenic (+42/+5) yjbH/yjbT DUF940 family extracellular polysaccharide protein/putative periplasmic protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 1265 total aligned reads displayed.

GGATCTCTTCTCGTCTGGCCCGACACGCAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAGGTCTGGT  >  NC_000913_3_pae_pgi/4238852‑4239148
                                                                                                                                                    |                                                                                                                                                    
 gATCTCTTCTCGTCTGGCCCGACACGCAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAA                                                                                                                                                     <  1:141270‑M1/149‑1 (MQ=255)
 cagcccaatgatggcccagccgctcaggcaaccagacctgcaaccgatatcgacggacaggaagacagaatgttttcgcctttacacaccagatcgcaaaccgggagtgaactgcgttcctgatggctcgacaggccattaagaatgaa                                                                                                                                                     >  2:588995‑M1/148‑149 (MQ=255)
  agcccaaggacggcccagtcgtccattgaacgagacctgcaaccgatatcgacggacaggaagacagaatgttttcgcctttacacaccagatcgcaaaccgggagtgaactgcgttcctgatggctcgacaggccattaagaatgAAg                                                                                                                                                    >  1:433644‑M1/147‑149 (MQ=255)
  aTCTCTTCTCGTCTGGCCCGACACGCAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAG                                                                                                                                                    <  2:267050‑M1/149‑1 (MQ=255)
  aTCTCTTCTCGTCTGGCCCGACACGCAGCCGTGCGGCGACTGCCTGGACGCCGCTGACGCGTGACGGTGGTCACCAACTTGGGCGTACGTTCCAGTCGTATGACATGACCAGCGACCCTAACTTCAATTCCCGCCAAGTCATCGCAAAG                                                                                                                                                    >  2:793050‑M1/1‑149 (MQ=255)
    ctctTCTTGTCTGGCCCGAAACGCAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGGAATTTCCAGTTGTATGCCAAGACAAGCGTCCGAAGCGTCAATTTCCGCTAAGTCATGGGAAAGGT                                                                                                                                                  <  1:29413‑M1/149‑1 (MQ=255)
    ctctTCTCGTGTGGCCCGACACGCGGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCGAATGCATGGGAAAGGT                                                                                                                                                  <  2:371586‑M1/149‑1 (MQ=255)
    ctctTCTCGTCTGGCCCGACACGCAGCCGTGCGGCGATTGGCTGGACGTCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGT                                                                                                                                                  <  1:904696‑M1/149‑1 (MQ=255)
    ctctTCTCGTCTGGCCCGACACGCAGCCGTGCGGCGAGTTGCTGGCCACCTCTTACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGT                                                                                                                                                  <  1:480048‑M1/149‑1 (MQ=255)
     tcttctCGTCTGGCCCAACACGCAGACGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGCAAGTTCCAGTTGTATGACATGGCCAGCGACCGTAGCATCAATCTCCCCTCAGCAATGCGAAAGGTG                                                                                                                                                 >  2:191228‑M1/1‑149 (MQ=255)
       aatgatggccaagttgctcagctaaccagacctgcaaccgatatcgacgcacaggaagacagaatgttttcgcctttacacaccagatcgcaaaccgggagtgaactgcgttcctgatggctctacaggccattaagaatgAAGGTGcc                                                                                                                                               >  2:122666‑M1/142‑149 (MQ=255)
        atgatggcccagtcgctcaggcaaccagacctgcaaccgatatcgacggacaggaagacagaatgttttcgcctttacacaccagatcgcaaaccgggagtgaactgcgttcctgatggctcgacaggccattaagaatgAAGGTGCCa                                                                                                                                              >  2:66132‑M1/141‑149 (MQ=255)
        aggatggcgcagtcgctcaggcaaccagacctgcaaccgatatcgacggacatgaagacagaatgttttcgcctttacacaccagatcgcaaaccgggagtgaactgcgttcctgatggctcgacaggccattaagaatgAAGGTGCCa                                                                                                                                              >  2:137340‑M1/141‑149 (MQ=255)
             tCTGGCCCGACACGCAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGtttt                                                                                                                                         <  1:513687/149‑1 (MQ=255)
              cTGGCCCGACACGCAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTc                                                                                                                                        <  1:750786/149‑1 (MQ=255)
               tGGCCCGACACGCAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCGAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATAGGAGAGCTGCCAGTTTTCg                                                                                                                                       >  2:430212/1‑149 (MQ=255)
                 gCCCGACACGCAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGca                                                                                                                                     >  1:811248/1‑149 (MQ=255)
                 gCCCGACACGCAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGca                                                                                                                                     <  1:621249/149‑1 (MQ=255)
                   ccGACACGCAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCCACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGAGCCAGCTTTCGcact                                                                                                                                   >  1:207807/1‑149 (MQ=255)
                    cGAAACGAAGCCGTGCGGCGAGTGGCCGGAGGGCGATGACGCGTTGCGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTGGTATGACATGACCAGCGAACGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTCCGcactc                                                                                                                                  <  2:412549/149‑1 (MQ=255)
                     gACACGCAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCa                                                                                                                                 <  2:449832‑M2/149‑2 (MQ=255)
                     gACACGCAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGGTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCa                                                                                                                                 >  1:172994‑M2/1‑148 (MQ=255)
                      acacGCAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCac                                                                                                                                <  1:997841‑M2/149‑3 (MQ=255)
                        acGCAGCCTTGTGGGGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCactg                                                                                                                              >  1:460034‑M2/1‑145 (MQ=255)
                        acGCAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCaccg                                                                                                                              <  2:985585‑M2/149‑5 (MQ=255)
                        acGCAGCCGGGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCactg                                                                                                                              >  1:95291‑M2/1‑145 (MQ=255)
                         ctgagccGGGCGGCGATTGGCTGGAGGCGGCTGACGCGGGACGGGGGTCAGCAACTGGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGTTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCactgg                                                                                                                             >  2:350913‑M2/4‑144 (MQ=255)
                             gCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTTactggcacc                                                                                                                         <  1:388552‑M2/149‑10 (MQ=255)
                                 tGCGGCGATTGGCTGGACGCCGCTGACTCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCa                                                                                                                     <  1:402124/149‑1 (MQ=255)
                                   gggcgATGGGCAGGAGGCCGCTGAGGCGGGACGGTGGTCCGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGCCCAGCGACCGTAGCGTCAATTTCCGCTCAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCAtt                                                                                                                   <  2:609219/148‑1 (MQ=255)
                                   cggcgATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCAtt                                                                                                                   <  1:771130/149‑1 (MQ=255)
                                   cggcgATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGAACCTTCAtt                                                                                                                   >  2:245793/1‑149 (MQ=255)
                                         ttGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCCCCTTCATTCTTCAt                                                                                                             >  1:247476/1‑149 (MQ=255)
                                          tGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATg                                                                                                            <  1:608054/149‑1 (MQ=255)
                                          tGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTAACTGGCACCTTCATTCTTAATg                                                                                                            >  1:263609/1‑149 (MQ=255)
                                           ggCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGC                                                                                                                                                >  2:930513‑M1/1‑112 (MQ=255)
                                            gCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGAGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGc                                                                                                          >  1:79192/1‑149 (MQ=255)
                                                gACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAA                                                                                                                                                     <  1:920210‑M1/102‑1 (MQ=255)
                                                   gtctcggACGCGCGACGGGGGTCAGCAAGTGTGGAGTAGGTGCCAGTTGGATGACATGACCAGCGATCGTAGCGTCAATGTCCGCTAAGGCATGGGAAAGGTGCCAGTTTTCGCACGCACTGGCACCTTCATTCTTAATGGCCTGTCGa                                                                                                   <  2:337698/143‑1 (MQ=255)
                                                   ggacggacaggaagacagaatgttgtcgcctttacacaccagatcgcaaaccgggagtgaactgcgttcctgatggctcgacaggccattaagaatgAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGa                                                                                                   >  1:713920‑M1/98‑149 (MQ=255)
                                                   gccgcTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGa                                                                                                   <  1:657574/149‑1 (MQ=255)
                                                     cgcTGACTGGGGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTGCCGCTAAGTCATGGGAAAGCTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGc                                                                                                 <  1:822144/149‑1 (MQ=255)
                                                      gcTGACGCGTGACGGTGGTCAGCAATTTGGGCGTTAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGcc                                                                                                <  1:599523/149‑1 (MQ=255)
                                                      gcTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGcc                                                                                                <  2:808084/149‑1 (MQ=255)
                                                      gcTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCAACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGcc                                                                                                >  2:877075/1‑149 (MQ=255)
                                                          aCGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGGGCCATCa                                                                                            >  2:17194/1‑149 (MQ=255)
                                                            gcgTGACGGTGGCCAGCAACTTGGGCGTAAGTCCCAGCTGCATGACATGACCAGCGACCGTAGCGGCAACTTCCCCTACGTCACACGCAAGGTGCCCAGTTTCGCCCCCCCTGCCACCTTCCTTCTACCTGGCCTGTCCAGCCCTCAgc                                                                                          >  2:519361/1‑148 (MQ=255)
                                                              gTGACGGTGGTCCGCAACTTGGGTGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGaa                                                                                        <  1:345569/149‑1 (MQ=255)
                                                                  cGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCa                                                                                    <  1:694160/149‑1 (MQ=255)
                                                                  cGGTGGTCAGCAACTTGGGCGGAAGTTCCAGTTGTATGACATGACCAGCGGCCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGCCACCTTCACTCTTAATGGCCTGTCGAGCCATCAGGAACGCa                                                                                    <  2:954009/149‑1 (MQ=255)
                                                                      gggcAGCAACTTGGGCGTAAGTTCGAGTTGTATGACAGGAGCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTc                                                                                <  2:748329/146‑1 (MQ=255)
                                                                       gtCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCactggca                                                                                                                           >  1:107466‑M2/1‑98 (MQ=255)
                                                                       gtCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCa                                                                               <  1:93458/149‑1 (MQ=255)
                                                                        tCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCAc                                                                              >  1:560330/1‑149 (MQ=255)
                                                                          aGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGACCTGTCGAGCCATCAGTAACGCACTTCAcgt                                                                            >  2:475143/1‑147 (MQ=255)
                                                                           gCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCCCTCAATGCCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTcc                                                                           >  2:713767/1‑149 (MQ=255)
                                                                             aaCTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCg                                                                         <  2:563055/149‑1 (MQ=255)
                                                                                  tggCGTCAGTTTGAGGTGGAGGACAGGACGAGCGACCGTAGCGTCAATTTACGCTAAGTCATGGGAAAGGGGCCGGTGTTTGCACTCACTGGCACCGTCATTCTTTATGGCCTGTCGAGCCATCAGGGACGCAGTTGACTCCCGGTTTg                                                                    <  2:830520/148‑1 (MQ=255)
                                                                                      gTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGAt                                                                <  1:501200/149‑1 (MQ=255)
                                                                                        atgTTTCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTTATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCt                                                              <  1:327209/147‑1 (MQ=255)
                                                                                           ttCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGgt                                                           >  1:219698/1‑149 (MQ=255)
                                                                                           ttCCAGTGGTATGACATGACCAGCGACCGTATCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGgt                                                           <  1:846508/149‑1 (MQ=255)
                                                                                           gacgaggtGTACGGCATGACTAGCGACCGTAGCGTCAATTTCCGCGAAGTCAGGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTAGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGgt                                                           <  2:152478/142‑1 (MQ=255)
                                                                                               aGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGgtgtgt                                                       >  1:57076/1‑149 (MQ=255)
                                                                                               aGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGgtgtgt                                                       >  1:881540/1‑149 (MQ=255)
                                                                                                gTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTa                                                      >  1:723816/1‑149 (MQ=255)
                                                                                                gTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCGGCTGTGTa                                                      >  2:397077/1‑149 (MQ=255)
                                                                                                  tGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTCCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTaaa                                                    <  1:893282/149‑1 (MQ=255)
                                                                                                   gTATGACATGACCAGCGACTGTTGCGTCAATTTCCGCGAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGAGCTGGTGTGTAAAg                                                   <  2:728190/149‑1 (MQ=255)
                                                                                                   gTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAg                                                   <  1:679972/149‑1 (MQ=255)
                                                                                                     atgacatgacCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTCCACTCCCGGTTTGCGATCGGGTGTGTaaggac                                                 >  1:529605/1‑145 (MQ=255)
                                                                                                     atgacaggacCAGGGACCGTAGCGTCCATTTCCGCTAAGTCATTGGAAAGGTGCCAGTTTTCGCACTCATTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGc                                                 <  2:900844/149‑1 (MQ=255)
                                                                                                       gacatgacCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGACCTGGTGTGTAAAGGCGa                                               >  2:284294/1‑149 (MQ=255)
                                                                                                        acatgacCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTATAAAGCCATTAGAAACGCAGTTCACTCTCGGTTTGCGATCTGGTGTGTAAAGGCTaa                                              >  1:312235/1‑149 (MQ=255)
                                                                                                          atgacCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGaaaa                                            <  2:686318/149‑1 (MQ=255)
                                                                                                              ccAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTc                                                                                                     >  1:19382/1‑88 (MQ=255)
                                                                                                              ccAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACAtt                                        <  1:547540/149‑1 (MQ=255)
                                                                                                               cAGCGACCGTAGCGTCAATTTCTGCTAAGTCAGGGGAAAGGTGCAAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTc                                       <  2:321436/149‑1 (MQ=255)
                                                                                                               cAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTc                                       >  1:63547/1‑149 (MQ=255)
                                                                                                               cAGCGACCGTAGCGTCAATTTCCGATCAGTCGTGGGAAAGGTACCAGGTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCGCTCCCGGTTTGCGATCTGGTGGGTAAAGGCGAAAACATTc                                       >  2:972437/1‑149 (MQ=255)
                                                                                                                aGCGACCGTAGCGTGAATTTCCGCTAAGGCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTGAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCt                                      <  2:630574/149‑1 (MQ=255)
                                                                                                                 gcaaCCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGCCGGGCGGGGGACGCAGTTCACTCCCGGTTTGCGCTCTGGTGTGTAAAGGCGAAAACATTCTg                                     >  1:735875/4‑149 (MQ=255)
                                                                                                                   gACCGTAGCGTCAATTTCCCCTAAGTCATGGGAAAGGTGCCACATTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCAGCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTc                                   <  1:158550/149‑1 (MQ=255)
                                                                                                                      cGTCGCCTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTc                                <  1:421882/149‑1 (MQ=255)
                                                                                                                       gTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTACGCACGCAGTGGCCTCATCATTCGTAATGGCCTGTCGAGCAATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAAACTTCTGTCTTcc                               >  1:645822/1‑149 (MQ=255)
                                                                                                                        tAGCGTCAATTTCCTTTAAGTCATGGGAAAGGTGCCAGTTTTTGCATTTACTGGTTCCTTCTTTCTTGTTGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCt                              <  1:129845/149‑1 (MQ=255)
                                                                                                                               aaTTTCCGCTAATTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTc                       <  1:973208/149‑1 (MQ=255)
                                                                                                                                      gcaaggTCATGGGAAAGGTGCCCGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATGAGGAACGCAGTTCGGTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCg                <  2:537864/144‑1 (MQ=255)
                                                                                                                                      gCTAAGTCATGTGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCg                <  2:649023/149‑1 (MQ=255)
                                                                                                                                        tAAGTCATGTGAAAGGTGCCAGTTTTCGCACTCACTGTCACCTTCATTCTTAATGGCCTTTCGAGCCATCAGGAACGCAGTTCACTCCCTGTTTGCTATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGt              <  1:1000309/149‑1 (MQ=255)
                                                                                                                                          aGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCCTACAGACGTGTTGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTg            <  1:984870/149‑1 (MQ=255)
                                                                                                                                            tCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACAtt                                        <  1:278273/119‑1 (MQ=255)
                                                                                                                                             cATTGGAAAGGTGCTATTTTTCGTACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAg         <  1:369212/149‑1 (MQ=255)
                                                                                                                                               tGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACAtt                                        >  2:85904/1‑116 (MQ=255)
                                                                                                                                                gggAAAGGTGCCAGTTTTCGCACACACTGGCACCTTCATACTTAATGGCTTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTCCGATCTGGTGTGTAAAAGCGAAAACATACTGTCTTACTGTCAGTCGAAATCGGTTGCAggac      >  2:219961/1‑147 (MQ=255)
                                                                                                                                                 ggAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAGGTCt     >  1:863799/1‑149 (MQ=255)
                                                                                                                                                   cAAGGTGACAGTTTTCGCACTCACGGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACCCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAGGTCTgg   >  1:233774‑M1/2‑149 (MQ=255)
                                                                                                                                                   aaaGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAGGTCTgg   <  2:499161/149‑1 (MQ=255)
                                                                                                                                                    aaGGTGCCAGTgagtgcgaaaactggcacctttcccatgacttagcggaagttgacgctacggtcgctactcatgtcatacaactggaacttacgcccaagttgctgaccaccgtcacccctcaccgccttccagccactcgccccccg  >  2:301746‑M1/1‑11 (MQ=255)
                                                                                                                                                    aaGGTGCCAGTTTTCGCACTCACTGGCCCCTTCATTCTTAATGGCCTGTAGAGCCATCCGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAATGCCCAAAACCTTATAACTTCCTGTCCGTCGAACCCACTCGCAGGTCTGGt  >  2:77419/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
GGATCTCTTCTCGTCTGGCCCGACACGCAGCCGTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAGGTCTGGT  >  NC_000913_3_pae_pgi/4238852‑4239148

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.