| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | = 2291296 | 54 (1.020) | 3 (0.060) | 3/260 | NT | 5.9% | noncoding (144/199 nt) | RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site | RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site |
| ? | NC_000913_3_pae_pgi | 3231380 = | 43 (0.840) | noncoding (129/283 nt) | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
AATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTT > NC_000913_3_pae_pgi/2291149‑2291435 | aaTAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCgg > 2:263704/1‑149 (MQ=255) gATGGCTTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTAAGTGGATCGATCAATTTATTTAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACt > 2:111103/1‑149 (MQ=255) aTGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTTTCAGTCCTACGTTGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGgcctacacta > 2:426701‑M1/1‑139 (MQ=255) aTGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGACTCATGCGCGGCGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTa > 2:5174/1‑149 (MQ=255) tggtgttAACATCGGGCTGAGATTTATGACAAACGCAAAACTGGCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTaa < 2:228370/144‑1 (MQ=255) tGGATTTATCATCGGGCTGAGATTTATGACAAACTCAAAGCTGCCTGGTGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTaa < 1:887739/149‑1 (MQ=255) tATCATCGGGCTGAGATTTATGACCACCGCAAAACTGCCTGATTGGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCAc > 2:868995/1‑149 (MQ=255) catcGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATAGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACttt < 1:463894/149‑1 (MQ=255) atcGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTg > 2:681994/1‑149 (MQ=255) tcGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCGGGCCTACGTGGATAGATCAATTTATTGACTTTACCCCATTTTGTAGGCCGGGTAAGGAGTTCACGCCGCATCCGGCATAAACTACGCCCACtttcc > 2:530812/1‑147 (MQ=18) cGGGCTGAGATTTATAACAAACGCAAAACTGACTGATGCGCTACGCTTATCAGGCCTACATGAATCGATCAATTTTTTGAATTTAAACAATTTTGTATGCCGGCTAAGAGGTTCACGCCAAATCCGTCATAAACTAAACGAACTTTGTc > 2:169213/1‑149 (MQ=21) cGGGCTGAGAGGTATGACAAACGCAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCGATCCATTGATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGtt < 2:917619/149‑2 (MQ=18) cGGGCGGAGATTTAAGAAAATCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCATACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGTCCGGATAAGTCGTTCACGCCGCATCCGGCATAAACTTATCTCACTTTGTc < 2:121163/149‑1 (MQ=18) ggCTGAGGTAAATGAACAGCGCAAACCTGCCTCATACGCTAGGCTTATCCGGCCTACGTCGATTGATCAATTTATTGAATTTACACAATTTTGTAGGCTGGATAAGGCGTTCACGCCGCATCCGGCAGCATCTCAGCGCACTTTGTCaa < 2:580936/149‑1 (MQ=17) gaTTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCt < 1:963257/149‑1 (MQ=255) aTTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATACACTAAGCGCACTTTGTCATCAGTCTa > 2:452893/1‑149 (MQ=255) aTTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCAGCATAAACTACGCGCACTTTTTCAAACGTCTa > 2:809243/1‑149 (MQ=18) ttATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGGTCAATTTATTGAATTTACACAATTTTGTAGGCCGGAAAAGGCGTTCAAGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGc > 1:534754/1‑149 (MQ=255) ttATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACGTTGTCAACAGTCTAGc > 1:230541/1‑149 (MQ=255) tATGACAAACGCAAAACTGCCTGACGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGcc < 2:636168/149‑1 (MQ=255) cGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCAt < 1:681994/149‑1 (MQ=255) gCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTATCAACAGTCTAGCCCGATGGCAta > 1:453487/1‑148 (MQ=255) tGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCg < 1:452246/149‑1 (MQ=255) tccTAATGCGCTACCCTTATCAGGCCTACGTGGTACGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCTCACTTTGTAAACAGTCTAGCCCGATGGCATCACCATCgg < 1:705596/148‑1 (MQ=21) gCCTGATGCGCTACGCTTTTCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCgg < 2:418308/149‑1 (MQ=255) cTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCttttt > 2:555839/1‑149 (MQ=255) tACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTttta < 1:424157/149‑1 (MQ=255) aCGCTTATCAAGCCTGCCTTGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTtttat < 1:382345/149‑1 (MQ=255) cgtATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTtttattta < 1:496678/147‑1 (MQ=255) ttATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATAACCATCGGGCCTCTTTTTATTTAc > 2:227621/1‑149 (MQ=255) ttATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTAACGCAGCATTCAACATAAAATAAACGAACTTTAAAAACAGTCTAGCCCGATGACATAACCATCCGACCCCTATTTATTTAc > 2:583654/1‑149 (MQ=21) aTCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTActc > 1:83265/1‑149 (MQ=255) cTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTgcg > 1:1003028/1‑149 (MQ=255) gatcAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGt < 1:966793/149‑1 (MQ=255) atcAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGtt > 1:130023/1‑149 (MQ=255) atcAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGCCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAAtttt > 2:451478/1‑149 (MQ=255) aTTTATGGAAGTTACACAATTTTGTAGGCCGGAGAAGGCGTTCACGCCGCATCCGGCATAAACTACGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCCGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCAt < 1:706421/149‑1 (MQ=37) ttGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCTTCGCCt > 1:639977/1‑149 (MQ=255) ttGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCt > 1:842717/1‑149 (MQ=255) acacAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGAta > 2:126218/1‑149 (MQ=255) aaTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTAATCTCCTGCGGCGACAAATGTTGCATTGTCTGCGCGAtactac > 1:561657/1‑149 (MQ=255) tttGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGtt < 1:931022/149‑1 (MQ=255) tttGCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGtt < 2:386066/149‑1 (MQ=255) tcgTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTc < 1:497352/147‑1 (MQ=255) tAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTACGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAAt > 1:542214/1‑149 (MQ=255) gCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTACATCGCCTGCGCGATACTACGTTCAATCAc < 2:130023/149‑1 (MQ=255) gCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGACGCCAAATGTTGCATCGCCTGCCCGATACTAAGATCaacacc > 1:837284/1‑145 (MQ=38) ccGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCAcc < 1:263704/149‑1 (MQ=255) cGGATAAGGCGTTCACGCCGCATCCGccctacatgtgtgttcccgtaggtc < 1:352699‑M1/51‑26 (MQ=255) cGGATAAGGCGTTCACGCCGCATCCGccctacatgtgtgttcccgtaggtc > 2:352699‑M1/1‑26 (MQ=255) aGGCGTTCACGCCGCATCCGGCATAAACTAAGCGAACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGCGCCTCTTTTTATTTACTCTCCTTCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGc < 2:107974/149‑1 (MQ=255) gCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGa > 1:795928/1‑149 (MQ=255) cGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAg < 1:554556/149‑1 (MQ=255) gTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCAcaccaaga > 1:213864/1‑142 (MQ=255) gTTCACGCCGCATCCGGCATAAACTAAGCGCACTCTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCTGCCACAAATGTTGCATCGCCTGAGCGATACTACGTTAGATCACCACCCGGagaga > 2:673407/1‑148 (MQ=255) cACGCCGCATCCGGTATAAACTAAGCGCACTTTGCCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATc < 1:102985/149‑1 (MQ=255) gccgcATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTCGCCCGATGGCATCCCCATCGGGCCTCTTTTTCTTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACATTCAATAACCGCACGGCGGGTATCgct > 1:142232/1‑147 (MQ=255) gccgcATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCCCCAGCGAGCCTCTTTTTATTTCCTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACGGACCGGCAAGAATCgct > 2:426555/1‑147 (MQ=255) | AATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTT > NC_000913_3_pae_pgi/2291149‑2291435 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |