| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | 3583428 = | NA (NA) | 25 (0.470) | 25/270 | NT | 43.1% | intergenic (+10/‑55) | yrhA/insA | pseudogene, interrupted by IS1E/IS1 repressor TnpA |
| ? | NC_000913_3_pae_pgi | 3665150 = | 33 (0.620) | coding (661/825 nt) | gadX | acid resistance regulon transcriptional activator; autoactivator | |||||
AACGGTCAGTGCCGTAAAAATTCCCTTGCGCAACAATACTTGCCGCCGAGTCACGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCTTCTTCGCGCAATTTTTTCTTTAACAGACTTGGA > NC_000913_3_pae_pgi/3665009‑3665298 | aaCGGTCAGGGCCGTAAAAATTCCCTTGCGCAACAATACTTGCCGCCGAGCAACTGTTCGACAATCTCTGCGCCGATCGCGCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGa < 1:783577/149‑1 (MQ=255) gcGGTCGGGGTCGTAAAAGTTTCCTTGCGGAACAATACTTGCGGCCGAGTCACGGTTCGATAATCTCTGCGCCGATCGCTCCGGATACGCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGat < 2:21530/148‑1 (MQ=255) ggccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcaccaccCGCTGTGATATCcac < 1:674373‑M2/15‑1 (MQ=255) aGTGCCGTAAAAATTCCCTTGCGCAACAATACTTGCCGCCGAGTCACGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATggtaat > 2:811160‑M2/1‑143 (MQ=255) aGTGCCGTAAAAATTCCCTAGCGCTACCTTACTTGCCGGCGAGTCACGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGATATACGAAACGCTGTTGTATctgc < 2:675029/149‑4 (MQ=255) tAAAAATTCCCTTGCGCAACAATACTTGCCGCCGAGTCACGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATAc > 2:803687/1‑149 (MQ=255) tAAAAATTCCCATGCGCAACAATACTTGCCGCCGAGTCACGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAgactac > 1:615589/1‑144 (MQ=255) caacaaTACTTGCCGCCGAGTCACTTTTCTACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGGCATCCCAGAAGAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgtt > 1:781916‑M2/1‑120 (MQ=255) aacaaTACTTGCCGCCGAGTCACGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTg > 1:798784/1‑149 (MQ=255) aTACTTGCCGCCGAGTCACGGTACGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGaaaa < 2:130008/149‑1 (MQ=255) cTTGCCGCCGAGTCACGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTTTGATATCCACAGGATACTGCAACTCGC‑TTAATTGa < 2:719006/143‑1 (MQ=255) cTTGCCGCCGAGTCACGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGa > 1:719006/1‑143 (MQ=255) cgtcagtagctaaacaggcgggacagctgatataacgtgaagcccctgtagcacctcaaaactaccatcataccctagatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCAt < 2:305116‑M2/48‑1 (MQ=255) gtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCATg < 1:537113‑M2/49‑1 (MQ=255) tagctgaacaggagggacagctgatagaaacagatgctattgtagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATaa < 1:385550‑M2/54‑1 (MQ=255) aGGCACGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcc > 1:216908‑M2/1‑102 (MQ=255) aacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATaa > 1:750909‑M2/90‑149 (MQ=255) aCGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATggtaataaacccaacttattaagagtgttatatgttcagataatgcccgat < 1:115667‑M2/149‑52 (MQ=255) aCGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATaa < 1:581681/149‑1 (MQ=255) ttgcaCAATCTCTGCGACAAACGCTCCGGATACTCTGTGGACTGCACTCTATAAAAATTTCCAAAGACGTAAATGAAACACTACACTCTCTGATATCCACAGTATACTGCAACTCGA‑TTAATTTAAAAACCATGTATAACAATAAGTTg < 2:107001/145‑1 (MQ=255) ggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACCCGC‑TTAATTGAAAAACCATGTATAACAATAAGTTg < 1:44231‑M2/64‑1 (MQ=255) cGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACCGGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATAAGTTGCa < 1:698595/149‑1 (MQ=255) acacTCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATAAGTTGCaaa > 1:905371/1‑149 (MQ=255) aCAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagctcatgcccggtgactttgt < 1:130404‑M2/149‑60 (MQ=255) aTCTCTGCGCCGATTGGTCCTGATACTCTGTGGGAGTTATCACATAATAATTTCGAAAGAAGTAAATGAAATACGAGACGCTGTGATATCTACAGGATAATGCAACTCGC‑TTAATTGAAAAATCATAGAAAAAAATAAGTTggacatac > 2:444021/1‑142 (MQ=255) cgcCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGAAACTCGC‑TTAATTGACAAACCATATATAACAATAAGTTGCAAAGCACGTTGCa > 1:480240/1‑149 (MQ=255) cGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCCGTGATggtaatgactccaactgattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccac < 2:140575‑M2/149‑73 (MQ=255) cGACCGTTCGTGATGTTCTGTGGGCGGCATCCCATAATAATTTCGAAAGACGGAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccac > 2:250116‑M2/1‑77 (MQ=255) gaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATAAGTTCCAAAGCACGTTACATTCTacac > 2:597902‑M2/64‑149 (MQ=255) aagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACt > 2:64723‑M2/63‑149 (MQ=255) gccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCa < 1:516349‑M2/89‑1 (MQ=255) cgtatacTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATggtaatgactccaacttagtgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttga > 1:345566‑M2/4‑68 (MQ=255) cTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttga > 1:342062‑M2/1‑68 (MQ=255) gATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAATGATGAAGAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTa > 1:830996/1‑149 (MQ=255) gATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGAACTCTGCAGTCTACACTCAGTa > 2:738534/1‑149 (MQ=255) ctggagcacctcaaaatcaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATAAGTTGCACAGCACGTTGCATTCTACACTCAGTaa < 2:902922‑M2/93‑1 (MQ=255) ctctGTGGGCGTCATCTAATAATAAATTCTAAAGACGTAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacga > 1:730657‑M2/1‑62 (MQ=255) ctctGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGATGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatattgagaacga < 2:963561‑M2/149‑88 (MQ=255) tctGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcccccgattttgagaacgac < 1:459640‑M2/149‑89 (MQ=255) tctGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgac < 1:767792‑M2/149‑89 (MQ=255) tctGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATAAGTTTCAAAGCACGTTGCATTCTACACTCAGTAAGCaa > 1:15043/1‑149 (MQ=255) agcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATAAGTTGAAAAGCACGTTGCATTCTACACTCAGTAAGaaa > 2:648539‑M2/53‑149 (MQ=255) tgtgGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacag < 1:974471‑M2/149‑91 (MQ=255) ttgGGCGTCATCCCATTATAATTTCGAAAGACGTAACTGAAATACGACGCTCTGTGATATCCATAGCATTCTGAAACTCGC‑GTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACTTTGCATTCTACACTCAGTAAGCAACtg < 2:756161/148‑1 (MQ=255) tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGa > 1:486001‑M2/47‑149 (MQ=255) aaaaccaccatcatacactaaatcaggaagttggcagcatcaccCGTTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAat < 1:413456‑M2/105‑1 (MQ=255) aaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACt > 2:310862‑M2/45‑67 (MQ=255) aaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACt < 1:310862‑M2/23‑1 (MQ=255) caccctcatatactaaatcagaaagttggcaccatcaccGGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATatgat < 2:328437‑M2/110‑1 (MQ=255) cccATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTAGA‑TTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGAATTCTACACTCAGTAAGAAACTGTGAATatgatg > 2:112378/1‑149 (MQ=255) accatcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAGGCAACTGTGAATattatg > 2:206694‑M2/39‑149 (MQ=255) ccATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCAt > 2:580717/1‑116 (MQ=255) ccATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCAt < 1:580717/116‑1 (MQ=255) ccATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGt < 1:803687/149‑1 (MQ=255) tcatacactaaatcagtaagttggcaggatcaccCGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGtctc < 2:39488‑M2/115‑1 (MQ=255) tcatacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGtctc > 1:592806‑M2/35‑149 (MQ=255) aataatTTCGAAAGACGTAAATGAAATACGACACGCTTTGATggtaatgactccaacttatttatagtgttttatgttcagataatgcccgatgactttggcatgcagctccaccgattttgagaacgacagcgacttccgtcccagcc > 1:15091‑M2/1‑42 (MQ=255) tccactaaatcaggaagtacgcagcatcaccCGCTGGGAGATCCCCAGGATACTGCAACTCGC‑TTAATTGAAAATCCATGTATAACAAGAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCtcttc < 1:480355‑M2/118‑1 (MQ=255) tacactaaatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCtcttc > 1:14248‑M2/32‑149 (MQ=255) taatTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAAGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCtcttc < 2:726908/149‑1 (MQ=255) tttCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCttcttc > 2:527500/1‑149 (MQ=255) tttCAAAAGACGTAAATGAAATACGACACGCTGTGATATACACTGGATCCTTTGACACTC‑TTACTTGATCAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCttcttc < 1:944287/149‑1 (MQ=255) cGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCTTCTTcgcg < 1:527500/149‑1 (MQ=255) aatcagtaagttggcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTAAGTAAGGAACTGTGGTTATGATGTCTCTTATTCgcgc > 2:843002‑M2/25‑149 (MQ=255) aaaGACGTAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcacccggttatatggacgacagcgacttccgtcccagccgtgccaggtg < 1:779525‑M2/149‑118 (MQ=255) agaagaaaaTGANATACGACACTCTGTAANAACCAAAGGNTACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCTTCTTCGCGCAAt < 1:71322/143‑1 (MQ=255) gTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTAGC‑TTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTATTCTTCGCGCAAttttt > 2:74113/1‑149 (MQ=255) aagttggcagcatcaccCGGTGTGAGATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATAAGTGTCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCTTCTTCGCGCAAttttt < 2:309333‑M2/132‑1 (MQ=255) tAAATGAAATACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctc < 2:496541‑M2/149‑125 (MQ=255) tAAAAGAAATACGACACGCTGTGATATCCACAGGATCCTGCAA‑TCACTTTAATTGAAAAACCATGTATAACAATAAGTTACAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCTTCTTCGCGCAAtttttt < 2:502673/149‑1 (MQ=255) tgggatcatcaccCGCTGTGATATCCACAGGATACTGCATCTCGC‑TTAATTGAAAAACCATGTATAACAATAAGTTGCACATCACGTTGCATTCTACACTCAGTAAGCAACTGTGTATATGATGTCTCTTCTTCGCGCAATTTTTTCtt < 2:824865‑M2/136‑1 (MQ=255) gcagcatcaccCGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACACTAATTTGCAAAGCACGTTCGTTGGTACACTCAGTAAGCAACTATGAATATGATGTCTCTTCTTCACGCAATTTTTTCTTTa > 1:736050‑M2/12‑149 (MQ=255) aaaTACGACACGCTGTGATTTTCATAGTATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCTTCTTCGCGCAATTTTTTCTTTaa < 2:755495/149‑1 (MQ=255) aaaTACGACACGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATGCTACACAAAGTGAATAACTGTGAATATGATGTCTCTTCTTCGCGCAATTTTTTCTTTaa < 1:237074/149‑1 (MQ=255) aTACGACACGCTGTGATggtaatgcctccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgccagcgacttccgtcccagccgtgccaggtgctgcctcagattcag > 2:6749‑M2/1‑17 (MQ=255) aTACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaagtgctgcctcagattcag < 1:22025‑M2/149‑133 (MQ=255) tACGACACGCTGTGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaacgatttttagaacgacagcgacttccgtcccagccgtgccaggtgctgcatcagattcagg < 1:326219‑M2/149‑134 (MQ=255) tACGACACGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCTTCTTCGCGCAATTTTTTCTTTAAcgg > 2:229188/1‑147 (MQ=255) cGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCTTCTTCGCGCAATTTTTTCTTTAACAGACTTGGa < 1:564505/149‑1 (MQ=255) | AACGGTCAGTGCCGTAAAAATTCCCTTGCGCAACAATACTTGCCGCCGAGTCACGGTTCGACAATCTCTGCGCCGATCGCTCCTGATACTCTGTGGGCGTCATCCCATAATAATTTCGAAAGACGTAAATGAAATACGACACGCTGTGATATCCACAGGATACTGCAACTCGC‑TTAATTGAAAAACCATGTATAACAATAAGTTGCAAAGCACGTTGCATTCTACACTCAGTAAGCAACTGTGAATATGATGTCTCTTCTTCGCGCAATTTTTTCTTTAACAGACTTGGA > NC_000913_3_pae_pgi/3665009‑3665298 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |