New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_pgi 2097275 =NA (NA)34 (0.210) 30/242 9.9 5.4% intergenic (+50/+46) hisI/wzzB phosphoribosyl‑AMP cyclohydrolase and phosphoribosyl‑ATP pyrophosphatase/regulator of length of O‑antigen component of lipopolysaccharide chains
?NC_000913_3_pae_pgi 2097299 = 593 (3.650)intergenic (+74/+22) hisI/wzzB phosphoribosyl‑AMP cyclohydrolase and phosphoribosyl‑ATP pyrophosphatase/regulator of length of O‑antigen component of lipopolysaccharide chains
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 593 total aligned reads displayed.

CGAGGCGTCTGATTTGATGTATCACCTGCTGGTGTTGTTGCAGGATCAGGGGCTGGATTTAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCACCCAGCAGCACCGCCAGAATCAAGGTAATTGCCTTTTTCG  >  NC_000913_3_pae_pgi/2097126‑2097424
                                                                                                                                                     |                                                                                                                                                     
      gTCTGATTTGATGTATCACCTGCTGGTGTTGTTGCAGGATCAGGGGCTGGATTTAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACg                                                                                                                                                       >  4:454541/1‑144 (MQ=255)
       tCTGATTTGATGTATCACCTGCTGGTGTTGTTGCAGGATCAGGGGCTGGATTTAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAgg                                                                                                                                                >  1:1324288/1‑150 (MQ=255)
        cTGATTTGATGTATCACCTGCTGGTGTTGTTGCAGGATCAGGGGCTGGATTTAACGACAGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCAATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGgt                                                                                                                                               <  3:357326/150‑1 (MQ=255)
         tGATTTGATGTATCACCTGCTGGTGTTGTTGCAGGATCAGGGGCTGGATTTAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGgtg                                                                                                                                              >  2:864365/1‑150 (MQ=255)
           aTTTGATGTATCACCTGCTGGTGTTGTTGCAGGATCAGGGGCTGGATTTAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTc                                                                                                                                            >  2:1531246/1‑150 (MQ=255)
             ttGATGTATCACCTGCTGGTGTTGTTGCAGGATCAGGGGCTGGATTTAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTcac                                                                                                                                          >  1:815703/1‑150 (MQ=255)
               gATGTATCACCTGCTGGTGTTGTTGCAGGATCAGGGGCTGGATTTAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTcacca                                                                                                                                        >  1:439153/1‑150 (MQ=255)
                aTGTATCACCTGCTGGTGTTGTTGCAGGATCAGGGGCTGGATTTAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTcaccac                                                                                                                                       >  2:1220977/1‑150 (MQ=255)
                   tATCACCTGCTGGTGTTGTTGCAGGATCAGGGGCTGGATTTAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCt                                                                                                                                    <  2:1731381/150‑1 (MQ=255)
                    aTCACCTGCTGGTGTTGTTGCAGGATCAGGGGCTGGATTTAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTg                                                                                                                                   >  4:956692/1‑150 (MQ=255)
                    aTCACCTGCTGGTGTTGTTGCAGGAACAGGGGCTGGATTTAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTg                                                                                                                                   >  2:815431/1‑150 (MQ=255)
                     tCACCTGCTGGTGTTGTTGCAGGATCAGGGGCTGGATTTAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGc                                                                                                                                  >  2:778414/1‑150 (MQ=255)
                       aCCTGCTGGTGTTGTTGCAGGATCAGGGGCTGGATTTAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGccc                                                                                                                                >  2:468802/1‑150 (MQ=255)
                       aCCTGCTGGTGTTGTTGCAGGATCAGGGGCTGGATTTAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGccc                                                                                                                                >  4:395002/1‑150 (MQ=255)
                        ccTGCTGGTGTTGTTGCAGGATCAGGGGCTGGATTTAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCt                                                                                                                               >  1:1691656/1‑150 (MQ=255)
                         ctgctgGTGTTGTTGCAGGATCAGGGGCTGGATTTAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCtt                                                                                                                              >  1:1878559/1‑150 (MQ=255)
                            ctgGTGTTGTTGCAGGATCAGGGGCTGGATTTAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCttttt                                                                                                                           >  2:2094066/1‑150 (MQ=255)
                                    gttgCAGGATCAGGGGCTGGATTTAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTaaaa                                                                                                                   <  3:207146/150‑1 (MQ=255)
                                       gCAGGATCAGGGGCTGGATTTAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCg                                                                                                                >  2:712360/1‑150 (MQ=255)
                                          ggATCAGGGGCTGGATTTAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGaaa                                                                                                             <  1:1220977/150‑1 (MQ=255)
                                           gATCAGGGGCTGGATTTAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGgtg                                                                                                                                              <  1:878981/116‑1 (MQ=255)
                                             tCAGGGGCTGGATTTAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCtt                                                                                                                        <  3:266390/136‑1 (MQ=255)
                                                ggggCTGGATTTAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCt                                                                                                                         <  1:1599800/132‑1 (MQ=255)
                                                ggggCTGGATTTAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTa                                                                                                       >  2:1947917/1‑150 (MQ=255)
                                                ggggCTGGATTTAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTa                                                                                                       <  1:1943177/150‑1 (MQ=255)
                                                ggggCTGGATTTAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGAGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGAAACCAAAAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTa                                                                                                       <  4:1265996/150‑1 (MQ=255)
                                                  ggCTGGATTTAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTTCCCTTTTTCTTTAAAACCGAAAAGATTACt                                                                                                     <  3:958611/150‑1 (MQ=255)
                                                     tGGATTTAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTcg                                                                                                  >  4:696565/1‑150 (MQ=255)
                                                        aTTTAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGt                                                                                               >  3:1061387/1‑150 (MQ=255)
                                                        aTTTAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGt                                                                                               <  3:629729/150‑1 (MQ=255)
                                                        aTTTAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGt                                                                                               >  3:774177/1‑150 (MQ=255)
                                                         tttAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCTGGCAAAAATACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGtt                                                                                              <  3:452369/150‑1 (MQ=255)
                                                           tAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGt                                                                                            >  1:386913/1‑150 (MQ=255)
                                                            aaCGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTa                                                                                           >  4:263902/1‑150 (MQ=255)
                                                             acgacgGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTaaaa                                                                                                                   <  3:699689/125‑1 (MQ=255)
                                                               gacgGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAAtt                                                                                        <  2:1408502/150‑1 (MQ=255)
                                                                acgGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCATAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTc                                                                                                                          <  4:1031404/115‑1 (MQ=255)
                                                                acgGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTc                                                                                                                          >  3:1031404/1‑115 (MQ=255)
                                                                 cgGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGc                                                                                      <  1:712360/150‑1 (MQ=255)
                                                                 cgGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGc                                                                                      <  1:779370/150‑1 (MQ=255)
                                                                  ggTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAAtt                                                                                        <  1:978482/147‑1 (MQ=255)
                                                                        tGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGt                                                                                               <  1:107508/134‑1 (MQ=255)
                                                                         gagaACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCttt                                                                                                                       <  1:1416586/109‑1 (MQ=255)
                                                                           gaACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCAtt                                                                            <  1:1367421/150‑1 (MQ=255)
                                                                               cTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGc                                                                        >  2:1128478/1‑150 (MQ=255)
                                                                               cTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGAGTACTTCGCGTTGTAATTGCGTAGAGCATTACGc                                                                        >  1:315797/1‑150 (MQ=255)
                                                                                 gCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCAt                                                                             >  1:1988756/1‑143 (MQ=255)
                                                                                 gCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGccc                                                                      <  2:1596807/150‑1 (MQ=255)
                                                                                  cGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGgtgt                                                                                                                                             >  2:364845/1‑78 (MQ=255)
                                                                                  cGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTaga                                                                                 <  2:1881626/138‑1 (MQ=255)
                                                                                   gTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCtt                                                                                                                        <  1:2100607/98‑1 (MQ=255)
                                                                                      aaCGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAAcc                                                                                                                 >  1:507895/1‑102 (MQ=255)
                                                                                      aaCGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTcgc                                                                                                 <  2:1996839/118‑1 (MQ=255)
                                                                                       aCGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTcgc                                                                                                 >  3:987520/1‑117 (MQ=255)
                                                                                         ggCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACaa                                                              >  2:1025058/1‑150 (MQ=255)
                                                                                               aGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCtt                                                                                                                        <  3:825885/86‑1 (MQ=255)
                                                                                               aGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCtt                                                                                                                        >  4:825885/1‑86 (MQ=255)
                                                                                               aGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCcg                                                        >  4:726865/1‑150 (MQ=255)
                                                                                               aGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCcg                                                        >  3:1154171/1‑150 (MQ=255)
                                                                                                gTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCg                                                                                     >  3:688841/1‑120 (MQ=255)
                                                                                                gTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCcgc                                                       <  3:395002/150‑1 (MQ=255)
                                                                                                 tGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCcgcg                                                      >  4:197657/1‑150 (MQ=255)
                                                                                                       gCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAAcc                                                >  2:1782448/1‑150 (MQ=255)
                                                                                                         ggggTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCAt                                              <  1:1128478/150‑1 (MQ=255)
                                                                                                           ggTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAAcc                                                                                                                 <  3:730261/81‑1 (MQ=255)
                                                                                                              aaGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGc                                                                                      <  2:986391/105‑1 (MQ=255)
                                                                                                                gCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAccc                                       <  3:118484/150‑1 (MQ=255)
                                                                                                                gCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAccc                                       >  2:426411/1‑150 (MQ=255)
                                                                                                                gCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAccc                                       >  4:754063/1‑150 (MQ=255)
                                                                                                                   gATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAAcc                                                                                                                 >  1:2025250/1‑73 (MQ=255)
                                                                                                                    aTGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCACCcagca                                   >  1:1547815/1‑150 (MQ=255)
                                                                                                                        gATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTa                                                                           >  2:1818819/1‑106 (MQ=255)
                                                                                                                        gATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTa                                                                           <  1:1818819/106‑1 (MQ=255)
                                                                                                                        gATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCACCCAGCAGCAc                               >  1:579260/1‑150 (MQ=255)
                                                                                                                         atatTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCACCcagcaggtga                              <  4:680541/150‑5 (MQ=255)
                                                                                                                          tttttttgCCGGATGCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTACTTTAAAGCCGAAAAAAATACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCACCCAGCAGCACCg                             >  2:899860/6‑150 (MQ=255)
                                                                                                                             tgttgCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCACCCAGCAGCACCGCCa                          <  3:479903/150‑1 (MQ=255)
                                                                                                                              gttgCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc                                        <  2:241335/135‑1 (MQ=255)
                                                                                                                              gttgCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCACCcag                                     >  1:175224/1‑138 (MQ=255)
                                                                                                                               ttgCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCACCCAGCAGCACCGCCAGa                        >  1:1160101/1‑150 (MQ=255)
                                                                                                                                tgCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCACCCAGCAGCACCGCCAGaa                       >  4:805608/1‑150 (MQ=255)
                                                                                                                                 gCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAAc                                                 >  4:1167602/1‑123 (MQ=255)
                                                                                                                                  ccGCATCCGGCAAAAAAACGGTCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTTTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCACCCAGCAGCACCGCCAGAATc                     >  4:1216835/1‑150 (MQ=255)
                                                                                                                                     cATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCACCCAGCAGCACCGCCAGAATCAAg                  >  4:527230/1‑150 (MQ=255)
                                                                                                                                      aTCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCa                                          >  1:811361/1‑125 (MQ=255)
                                                                                                                                         cGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATg                                             <  1:1506159/119‑1 (MQ=255)
                                                                                                                                          ggCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTcg                                                                                                  >  3:923545/1‑65 (MQ=255)
                                                                                                                                          ggCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTg                                                                                             <  2:1685629/70‑1 (MQ=255)
                                                                                                                                          ggCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTa                                                                                   <  2:1471193/80‑1 (MQ=255)
                                                                                                                                          ggCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCACCCAGCAGCACCGCCAGAATCAAGGTAAt             <  4:303143/150‑1 (MQ=255)
                                                                                                                                           gCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCcgc                                                       <  2:565045/107‑1 (MQ=255)
                                                                                                                                           gCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCACCCAGCAGCACCGCCAGAATCAAGGTAAtt            >  3:30592/1‑150 (MQ=255)
                                                                                                                                            cAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCACCCAGCAGCACCGCCAGAATCa                    <  4:106134/141‑1 (MQ=255)
                                                                                                                                             aaaaaaaCGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc                                        >  1:1002840/1‑120 (MQ=255)
                                                                                                                                                aaaaCGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCACCCAGCAGCACCGCCAGAATCAAGGTAATTGCCtt       >  1:1266634/1‑150 (MQ=255)
                                                                                                                                                 aaaCGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCACCCAGCAGCACCGCCAGAATCAAg                  >  3:1238380/1‑138 (MQ=255)
                                                                                                                                                 aaaCGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCACCCAGCAGCACCGCCAGAATCAAGGTAATTGCCttt      >  2:1327107/1‑150 (MQ=255)
                                                                                                                                                 aaaCGGGCAAGGTGTCACCACACTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCACCCAGCAGCACCGCCAGAATCAAGGTAATTGCCttt      >  2:1262431/1‑150 (MQ=255)
                                                                                                                                                   aCGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCACCCAGCAGCACCGCCAGaa                       >  2:642688/1‑131 (MQ=255)
                                                                                                                                                   aCGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCACCCAGCAGCACCGCCAGaa                       <  1:642688/131‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
CGAGGCGTCTGATTTGATGTATCACCTGCTGGTGTTGTTGCAGGATCAGGGGCTGGATTTAACGACGGTAATTGAGAACCTGCGTAAACGGCATCAGTGAGTTGCGGGGTAAGCGGATGCGATATTGTTGCCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCACCCAGCAGCACCGCCAGAATCAAGGTAATTGCCTTTTTCG  >  NC_000913_3_pae_pgi/2097126‑2097424

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.