| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913_3_pae_pgi | 4,158,929 | C→A | A147E (GCG→GAG) | oxyR → | oxidative and nitrosative stress transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_pgi | 4,158,929 | 0 | C | A | 92.4% | 361.9 / 22.0 | 119 | A147E (GCG→GAG) | oxyR | oxidative and nitrosative stress transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (4/5); new base A (52/58); total (56/63) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.11e-01 | |||||||||||
Only 100 of 119 total aligned reads displayed.
CCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAG > NC_000913_3_pae_pgi/4158785‑4159075 | ccACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTgg > 2:6429/1‑150 (MQ=255)ccACAGTTGGACCCTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTgg > 2:1033208/1‑150 (MQ=255) cacaGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGt > 1:1439851/1‑150 (MQ=255) ttGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAag > 2:531416/1‑150 (MQ=255) tGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAaga < 3:320947/150‑1 (MQ=255) gACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAagaga < 2:748520/150‑1 (MQ=255) cGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCg > 2:87197/1‑150 (MQ=255) tACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGaa > 1:174091/1‑150 (MQ=255) ccTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGc > 2:1325376/1‑150 (MQ=255) tGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGCGCTGGTGAAAGAGAGCGAAGcat > 2:958118/1‑150 (MQ=255) gCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGcatt < 2:2058/150‑1 (MQ=255) tACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGcattca < 2:143940/150‑1 (MQ=255) tACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGcattca > 1:143940/1‑150 (MQ=255) aCCGCATATTATCCCTATCCTGCACCAGACCTTACCAAAGCTCGCAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGACACAGAGCGAAGccttcat > 2:1280347/1‑150 (MQ=255) ccGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGcattcatt < 2:1280442/150‑1 (MQ=255) cGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTg > 2:1244300/1‑150 (MQ=255) gCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGa > 1:897708/1‑150 (MQ=255) gCATATTATCCCTATGCTGCACCAGACCTTTCCAAAACTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGa > 4:714689/1‑150 (MQ=255) cATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGaa < 2:390056/150‑1 (MQ=255) atatTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAg < 2:568235/150‑1 (MQ=255) attatCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTg < 2:26529/150‑1 (MQ=255) ttatCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGt > 2:589991/1‑121 (MQ=255) cTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCgttgt < 4:532774/150‑1 (MQ=255) gctgcACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTtga < 1:6429/150‑1 (MQ=255) gcACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTtgatga < 4:407452/150‑1 (MQ=255) aCCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGc < 4:441985/150‑1 (MQ=255) ccAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGcc > 2:182090/1‑150 (MQ=255) gACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAAt < 2:678309/150‑1 (MQ=255) gACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAAt < 2:988080/150‑1 (MQ=255) cTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGtt > 4:647683/1‑150 (MQ=255) ttCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGttt > 1:574755/1‑134 (MQ=255) ttCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGttt < 2:574755/134‑1 (MQ=255) tCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCt < 1:1377970/150‑1 (MQ=255) aaaGCTGGAAATGTAGCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGc < 3:279963/150‑1 (MQ=255) tGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGctatct < 2:897708/150‑1 (MQ=255) aaTGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGa > 3:830770/1‑150 (MQ=255) aTGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGATCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGaa < 1:1461042/150‑1 (MQ=255) tGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAg < 1:1244300/150‑1 (MQ=255) gTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGa < 2:1207939/150‑1 (MQ=255) tATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGAt < 3:733080/150‑1 (MQ=255) tATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGAt < 1:1033208/150‑1 (MQ=255) tATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACT‑GACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATc > 2:854429/1‑150 (MQ=255) tGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGTCAATGTTGCTGGCTATCTATGAAGATCAcc > 4:684520/1‑150 (MQ=255) tGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCAcc < 2:700379/150‑1 (MQ=255) aTGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGt > 4:50800/1‑150 (MQ=255) tGAAGCACAGACCCACCAGTTACTGGCGCAACT‑GACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTgg < 1:854429/150‑1 (MQ=255) gAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGct < 3:22061/129‑1 (MQ=255) gAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGct > 4:22061/1‑129 (MQ=255) aaGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGCGCTGGTGAAaga > 4:83244/1‑76 (MQ=255) aaGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGCGCTGGTGAAaga < 3:83244/76‑1 (MQ=255) aaGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTtga > 1:1014576/1‑109 (MQ=255) aaGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTtga < 2:1014576/109‑1 (MQ=255) aaGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGcat < 1:734707/87‑1 (MQ=255) aaGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGcat > 2:734707/1‑87 (MQ=255) aaGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTggg < 4:830770/150‑1 (MQ=255) cacaGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGa > 4:573478/1‑150 (MQ=255) cccACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACcgcg < 1:87197/150‑1 (MQ=255) ccaccaGTTACTGGCGCAACTGGACAGCGGCAGACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGCAGATCACCCGTGGGCGAACCGCGa > 2:147511/1‑150 (MQ=255) ccaccaGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGcattcat < 1:824199/81‑1 (MQ=255) ccaccaGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGa < 1:1196876/150‑1 (MQ=255) caccaGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAg > 4:333859/1‑102 (MQ=255) caccaGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAg < 3:333859/102‑1 (MQ=255) caccaGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGaa < 1:199317/150‑1 (MQ=255) cccaGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGTTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAAt < 3:722012/149‑1 (MQ=255) aGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCg < 3:647683/150‑1 (MQ=255) aGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCg > 1:377389/1‑150 (MQ=255) gTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGt < 1:1325376/150‑1 (MQ=255) tACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTAc < 3:225631/150‑1 (MQ=255) tACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTAc > 1:357702/1‑150 (MQ=255) tGGCGCAACGGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGa > 2:1034745/1‑150 (MQ=255) ggCGCAACTGGACAGCGGCAAACTCGAATGCGTGATCCTCGAGCTGGTGAAAGAGAGCGACGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTGTCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGAt > 1:1072007/1‑150 (MQ=255) gcgcAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATg < 2:1060114/96‑1 (MQ=255) gcgcAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATg > 1:1060114/1‑96 (MQ=255) gcgcAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTtga > 4:182207/1‑86 (MQ=255) cTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGttt < 4:490532/78‑1 (MQ=255) cTGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGttt > 3:490532/1‑78 (MQ=255) tGGACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATc < 1:369432/150‑1 (MQ=255) gACAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTg < 1:1034745/150‑1 (MQ=255) aCAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTgg > 1:596961/1‑150 (MQ=255) aCAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTgg > 1:1268004/1‑150 (MQ=255) cAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGaa > 1:685769/1‑103 (MQ=255) cAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGaa > 1:685985/1‑103 (MQ=255) cAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGaa < 2:685769/103‑1 (MQ=255) cAGCGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGaa < 2:685985/103‑1 (MQ=255) cGGCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGcc < 3:479137/63‑1 (MQ=255) ggCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGGGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTgg < 2:230051/145‑1 (MQ=255) ggCAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTgg > 1:230051/1‑145 (MQ=255) cAAACTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGa > 2:1250863/1‑150 (MQ=255) aaCTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGaaa > 2:259853/1‑150 (MQ=255) aCTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGAt < 4:431607/136‑1 (MQ=255) aCTCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGAt > 3:431607/1‑136 (MQ=255) tCGATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAAc < 4:393983/150‑1 (MQ=255) gATTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAActg < 1:646666/150‑1 (MQ=255) aTTGCGTGATCCTCGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAActgc < 1:958118/150‑1 (MQ=255) aTTGCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGGTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAActgc > 2:1110456/1‑150 (MQ=255) gCGTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGAGCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGAGAAAAACTGCTGa < 1:147511/150‑1 (MQ=255) gTGATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATg > 3:449691/1‑150 (MQ=255) gATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACcgc < 1:1314418/103‑1 (MQ=255) gATCCTCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCt > 2:265656/1‑150 (MQ=255) tCGAGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAg > 4:765017/1‑150 (MQ=255) | CCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGATCCTCGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAG > NC_000913_3_pae_pgi/4158785‑4159075 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |