New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_pgi = 42348381834 (20.900)45 (0.550) 31/272 2.6 2.5% intergenic (‑1605/‑328) lysC/yjbE lysine‑sensitive aspartokinase 3/extracellular polysaccharide production threonine‑rich protein
?NC_000913_3_pae_pgi = 4234843 1828 (22.220)intergenic (‑1610/‑323) lysC/yjbE lysine‑sensitive aspartokinase 3/extracellular polysaccharide production threonine‑rich protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 1991 total aligned reads displayed.

GGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATTAATTGCTTTTGTTTTTATTTTAAGTTTATGATT  >  NC_000913_3_pae_pgi/4234694‑4234992
                                                                                                                                                      |                                                                                                                                                     
ggCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTAt                                                                                                                                                       >  3:77263/1‑150 (MQ=255)
 gCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCCGGCCTACAGGTCGATGGCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACACTTCCGACGTTATg                                                                                                                                                      <  4:541896‑M2/150‑2 (MQ=255)
 gCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATg                                                                                                                                                      <  4:346105‑M2/150‑2 (MQ=255)
    ttCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATATCAATGCCGACGTTATgtcg                                                                                                                                                   >  4:481640‑M2/1‑146 (MQ=255)
    ttCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATgtcg                                                                                                                                                   >  4:316084‑M2/1‑146 (MQ=255)
      cACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATgtcggc                                                                                                                                                 <  3:264512‑M2/150‑7 (MQ=255)
         gccgcATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATgtcggcatt                                                                                                                                              <  4:515750‑M2/150‑10 (MQ=255)
         gccacATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATgtcggcatt                                                                                                                                              <  2:298768‑M2/150‑10 (MQ=255)
            gcATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCAttttt                                                                                                                                           <  1:636743/150‑1 (MQ=255)
               tCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTa                                                                                                                                        <  3:210268/150‑1 (MQ=255)
                 cGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATACCCTTAATAGCAATGCCGACGTTATGTCGGCATTTTTTTATc                                                                                                                                      <  2:40971/150‑1 (MQ=255)
                 cGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATgtcggcatttttattaa                                                                                                                                      >  2:748722‑M2/1‑133 (MQ=255)
                 cGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATc                                                                                                                                      >  2:117899/1‑150 (MQ=255)
                 cGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATc                                                                                                                                      <  1:530690/150‑1 (MQ=255)
                  ggCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCAAGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCa                                                                                                                                     >  2:720690/1‑150 (MQ=255)
                   gCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAg                                                                                                                                    <  3:388448/150‑1 (MQ=255)
                       ccGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATaa                                                                                                                                <  4:40100/150‑1 (MQ=255)
                       ccGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATaa                                                                                                                                >  2:360026/1‑150 (MQ=255)
                        cGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATaaa                                                                                                                               >  4:212038/1‑150 (MQ=255)
                            gCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATccc                                                                                                                           <  3:335049/150‑1 (MQ=255)
                             ccTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATcccc                                                                                                                          <  1:558441/150‑1 (MQ=255)
                              cTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCAttttt                                                                                                                                           <  3:45782/132‑1 (MQ=255)
                               tGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCtt                                                                                                                        <  2:816897/150‑1 (MQ=255)
                                    cGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTg                                                                                                                   <  1:849684/150‑1 (MQ=255)
                                    agACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATGTGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTAGGTCGGCATTTTTTTATCAGATAAACCCCCTTGTCTg                                                                                                                   <  4:453602/149‑1 (MQ=255)
                                     gACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGt                                                                                                                  >  1:695259/1‑150 (MQ=255)
                                     gACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGt                                                                                                                  >  3:411484/1‑150 (MQ=255)
                                        gcgGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAAt                                                                                                               >  2:853509/1‑150 (MQ=255)
                                           gTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTa                                                                                                            >  2:426821/1‑150 (MQ=255)
                                            tCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTaa                                                                                                           >  4:69701/1‑150 (MQ=255)
                                              gcgTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACg                                                                                                         >  3:136566/1‑150 (MQ=255)
                                                 tCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACTATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGaa                                                                                                      <  1:252187/150‑1 (MQ=255)
                                                  cTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGaaa                                                                                                     <  1:90007/150‑1 (MQ=255)
                                                   ttATCAGGCCTACAGGTCGCTGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGGCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAAt                                                                                                    <  2:882378/150‑1 (MQ=255)
                                                    taaaaaaccTACAGGTTGATACCGATATTTACATCGTAT‑TTGGCCATTAATACATAGCTCGATTGATTAAATAACCTTAATACCAATGCCGACTTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATc                                                                                                   <  2:578371/143‑1 (MQ=255)
                                                    tATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATc                                                                                                   >  2:387882/1‑150 (MQ=255)
                                                     aTCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCa                                                                                                  >  4:423729/1‑150 (MQ=255)
                                                     aTCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCa                                                                                                  >  1:348063/1‑150 (MQ=255)
                                                      tCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCAt                                                                                                 <  2:525471/150‑1 (MQ=255)
                                                       cAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATa                                                                                                <  1:431179/150‑1 (MQ=255)
                                                        aGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAACCATAc                                                                                               >  2:276612/1‑150 (MQ=255)
                                                         ggCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATAcc                                                                                              <  4:189725/150‑1 (MQ=255)
                                                         ggCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATAcc                                                                                              >  3:285780/1‑150 (MQ=255)
                                                         ggCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATAcc                                                                                              >  1:307584/1‑150 (MQ=255)
                                                          gCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTaa                                                                                                                <  3:243455/131‑1 (MQ=255)
                                                                 ggTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGtt                                                                                      <  3:510673/150‑1 (MQ=255)
                                                                   tCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATc                                                                                                                                      >  2:474821/1‑100 (MQ=255)
                                                                    cGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAAt                                                                                   <  3:315242/150‑1 (MQ=255)
                                                                        gtcgaTATGTAGGCCGGATATCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATgtcggcattgttattaaggttatttaatcaatcgtgctatgtattaattgccgaatacgatgtacatatcg                                                                                >  2:128454‑M2/3‑79 (MQ=255)
                                                                        gCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGCAATCATACCGTGAGGTTAATCCTa                                                                               >  1:449535/1‑150 (MQ=255)
                                                                        gCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTa                                                                               <  1:765302/150‑1 (MQ=255)
                                                                          cGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTaaa                                                                             >  1:172578/1‑150 (MQ=255)
                                                                                gTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGAt                                                                       >  4:13588/1‑150 (MQ=255)
                                                                                gTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGACTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGAt                                                                       >  2:606201/1‑150 (MQ=255)
                                                                                  aCATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGAttt                                                                     >  2:695022/1‑150 (MQ=255)
                                                                                  aCATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGAttt                                                                     <  1:737857/150‑1 (MQ=255)
                                                                                   cATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGAtttt                                                                    >  1:871160/1‑150 (MQ=255)
                                                                                       gTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAAt                                                                <  1:787435/150‑1 (MQ=255)
                                                                                        tAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATc                                                               <  2:340703/150‑1 (MQ=255)
                                                                                          t‑tCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCgt                                                             <  2:314411/150‑1 (MQ=255)
                                                                                          t‑tCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCgt                                                             <  3:360211/150‑1 (MQ=255)
                                                                                            tCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCgtt                                                            <  1:198070/150‑1 (MQ=255)
                                                                                             cGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCgttg                                                           >  4:158090/1‑150 (MQ=255)
                                                                                               gCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCgttgtt                                                         >  2:203851/1‑150 (MQ=255)
                                                                                                cAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATAGTTGttt                                                        <  2:641881/150‑1 (MQ=255)
                                                                                                  aTTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGCTAAATCCCCTTGTCCGTAATTTAACAGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCATTGTTTAt                                                      >  2:788341/1‑150 (MQ=255)
                                                                                                  aTTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCGTTGTTTAt                                                      >  1:477508/1‑150 (MQ=255)
                                                                                                    tAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCGTTGTTTAttt                                                    >  1:216305/1‑150 (MQ=255)
                                                                                                       tACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCGTTGTTTATTTCgg                                                 >  2:15488/1‑150 (MQ=255)
                                                                                                            aGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATccc                                                                                                                           >  1:400426/1‑71 (MQ=255)
                                                                                                              cACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCGTTGTTTATTTCGGAAAATAc                                          >  3:478102/1‑150 (MQ=255)
                                                                                                                    tgattAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGAt                                    <  2:238208/150‑1 (MQ=255)
                                                                                                                     gattAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGAtt                                   >  1:605140/1‑150 (MQ=255)
                                                                                                                      attAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATTa                                  >  2:44742/1‑150 (MQ=255)
                                                                                                                      attAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATTa                                  >  4:560836/1‑150 (MQ=255)
                                                                                                                        tAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATTAAt                                >  1:81926/1‑150 (MQ=255)
                                                                                                                         aaaTAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGt                                                                                            <  2:553165/89‑1 (MQ=255)
                                                                                                                         aaaTAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATTAAtt                               <  1:377645/150‑1 (MQ=255)
                                                                                                                          aaTAACCTTAATAACAATGCCGACGTTATgtcggcatttttattaaggttatttaatcaatcgtgctatgtattaattgccgaatacgatgtacatatcggcatcgacctgtaggcctgataagacgcgaccgcgtcgcatcaggcatcg                              <  1:716072‑M2/150‑122 (MQ=255)
                                                                                                                          aaTAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATTAATTg                              >  4:289850/1‑150 (MQ=255)
                                                                                                                             aaCCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATTAATTGCtt                           >  1:278163/1‑150 (MQ=255)
                                                                                                                             aaCCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATTAATTGCtt                           >  3:55784/1‑150 (MQ=255)
                                                                                                                              aCCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATTAATTGCttt                          >  3:437262/1‑150 (MQ=255)
                                                                                                                               ccTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATTaa                                 >  1:66273/1‑142 (MQ=255)
                                                                                                                                cTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATTAATTGCTTTTg                        <  3:536454/150‑1 (MQ=255)
                                                                                                                                cTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATAAATTGATTTTg                        >  3:182765/1‑150 (MQ=255)
                                                                                                                                 ttAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATTAATTGCTTTTGt                       <  1:508611/150‑1 (MQ=255)
                                                                                                                                  taataaCAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATTAATTGCTTTTGtt                      >  4:240846/1‑150 (MQ=255)
                                                                                                                                  taataaCAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATTAATTGCTTTTGtt                      >  3:161374/1‑150 (MQ=255)
                                                                                                                                    ataaCAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATTAATTGCTTTTGtttt                    >  2:504900/1‑150 (MQ=255)
                                                                                                                                    aaaaaaaTGCCGACATAACGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATTAATTGCTTTTGtttt                    >  3:100751/6‑150 (MQ=255)
                                                                                                                                      aaCAATGCCGACGTTATgtcggcattgttattaaggttatttaatcaatcgtgctatgtattaattgccgaatacgatgtacatatcggcatcgacctgtaggcctgataagacgcgaccgcgtcgcatcaggcatcggttgccggatgc                  <  1:585165‑M2/150‑134 (MQ=255)
                                                                                                                                      aaCAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATTAATTGCTTTTGTtttta                  <  2:658763/150‑1 (MQ=255)
                                                                                                                                           tGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATTAATTGCTTTTGTttttatttta             <  4:264179/150‑1 (MQ=255)
                                                                                                                                             ccGACGTTTTGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAATGGATTTCATACCGTGATGTTTATCTTAAAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATTAATTGCTTTTGTTTTTATTTTAAg           <  1:121397/150‑1 (MQ=255)
                                                                                                                                             ccGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATTAATTGCTTTTGTTTTTATTTTAAg           <  4:107486/150‑1 (MQ=255)
                                                                                                                                              cGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATTAATTGCTTTTGTTTTTATTTTAAGt          >  1:100333/1‑150 (MQ=255)
                                                                                                                                              cGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATTAATTGCTTTTGTTTTTATTTTAAGt          >  1:1443/1‑150 (MQ=255)
                                                                                                                                              cGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATTAATTGCTTTTGTTTTTATTTTAAGt          >  2:169854/1‑150 (MQ=255)
                                                                                                                                                     aTGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTATTTGTTTTTTATTTCCGAAAATACGCAGATTAATTTCTTTTCTTTTTATTTTAAGTTTATGAt   >  4:385548/1‑150 (MQ=255)
                                                                                                                                                      |                                                                                                                                                     
GGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTAT‑TCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATTAATTGCTTTTGTTTTTATTTTAAGTTTATGATT  >  NC_000913_3_pae_pgi/4234694‑4234992

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.