Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913_3_pae_pgi2,799,0290GT48.0% 11.3 / 156.3 103intergenic (‑534/‑135)stpA/alaEDNA binding protein, nucleoid‑associated/alanine exporter, alanine‑inducible, stress‑responsive
Reads supporting (aligned to +/- strand):  ref base G (24/29);  new base T (20/29);  total (45/58)
Fisher's exact test for biased strand distribution p-value = 6.92e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.72e-02
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 103 total aligned reads displayed.

AGCGTTACCTCACCCCCAAACTTTCATTAGTGATATTAAAGGTAAGGCCATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCATTAGCATGTTCTCACCGCA  >  NC_000913_3_pae_pgi/2798881‑2799177
                                                                                                                                                    |                                                                                                                                                    
agagTTACCACACACCAAAACTTTCATTAGTGATATTAAAGGTAAGGCCATATCTAATTGATTTAATTAAAAATAAATCATATCGACATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGa                                                                                                                                                     <  2:234660/147‑1 (MQ=255)
aGCGTTACCTCACCCCCAAACTTTCATTAGTGATATTAAAGGTAAGGCCATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGa                                                                                                                                                     >  1:874845/1‑150 (MQ=255)
  cGTTACCGCACCCCCAAACTTTCATTAGTGATATTAAAGGTAAGGCCATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACt                                                                                                                                                   <  1:468075/150‑1 (MQ=255)
         tCACCCCCAAACTTTCATTAGTGATATTAAAGGTAAGGCCATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACtaaataaa                                                                                                                                            >  3:523786/1‑150 (MQ=255)
           aCCCCCAAACTTTCATTAGTGATATTAAAGGTAAGGCCATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATaaaaa                                                                                                                                          <  1:210914/150‑1 (MQ=255)
           aCCCCCAAACTTTCATTAGTGATATTAAAGGTAAGGCCATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATaaaaa                                                                                                                                          <  1:211219/150‑1 (MQ=255)
           aCCCCCAAACTTTCATTAGTGAAATTAAAGGAAAAGACATATCTAATTGATTTAATTAAAAATAAATCATATGGGAATGTAAAAATCAACAAAAAAAAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATaaaaa                                                                                                                                          <  2:524140/150‑1 (MQ=255)
                cAAACTTTCATTAGTGATATTAAAGGTAAGGCCATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAAttttt                                                                                                                                     <  1:66961/150‑1 (MQ=255)
                     tttCATTAGTGATATTAAAGGTAAGGCCATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTa                                                                                                                                >  2:560903/1‑150 (MQ=255)
                          ttAGTGATATTAAAGGTAAGGCCATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGa                                                                                                                           <  1:392803/150‑1 (MQ=255)
                           tAGTGATATTAAAGGTAAGGCCATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCAAAAAAAAAAAAAAAACGAGCCGTTACGGAATATCTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGAt                                                                                                                          <  4:48345/150‑1 (MQ=255)
                             gTGATATTAAAGGTAAGGCCATATCTAATTGATTTAATTAAAAATAAATCATACCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATACTTTATCTACAAAAACTGACTAAATAAAAGTTTTTCACTAATTGATTa                                                                                                                        <  2:551125/150‑1 (MQ=255)
                              tGATATTAAAGGTAAGGCCATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAg                                                                                                                       <  1:137570/150‑1 (MQ=255)
                              tGATATTAAAGGTAAGGCCATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAg                                                                                                                       >  3:501450/1‑150 (MQ=255)
                              tGATATTAAAGGTAAGGCCATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAg                                                                                                                       >  1:580927/1‑150 (MQ=255)
                              tGATATTAAAGGTAAGGCCATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAg                                                                                                                       >  3:233125/1‑150 (MQ=255)
                                  atTAAAGGTAAGGCCATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCAt                                                                                                                   <  1:9007/150‑1 (MQ=255)
                                  atTAAAGGTAAGGCCATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCAt                                                                                                                   >  1:419111/1‑150 (MQ=255)
                                    tAAAGGTAAGGCCATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAg                                                                                                                 >  2:676044/1‑150 (MQ=255)
                                      caagTAAGCCCATATCTAATTGAATCAAATAAAAATAAATCATATCGGCATGTAAAAATCCACAAAGTACAAAAAACGAGCCGATACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTCATTAGTCATAGcc                                                                                                               >  2:769124/4‑150 (MQ=255)
                                       aGGTAAGGCCATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCa                                                                                                              <  2:416259/150‑1 (MQ=255)
                                         gTAAGGCCATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAGAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGc                                                                                                            >  1:542170/1‑150 (MQ=255)
                                           aaGGCCATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGa                                                                                                          >  4:355860/1‑150 (MQ=255)
                                              gCCATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGatat                                                                                                       >  2:418141/1‑150 (MQ=255)
                                              gCCATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGatat                                                                                                       >  4:309504/1‑150 (MQ=255)
                                                    tCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTa                                                                                                 >  2:168686/1‑150 (MQ=255)
                                                     cTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTAt                                                                                                >  1:494450/1‑150 (MQ=255)
                                                      tAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATg                                                                                               <  1:317828/150‑1 (MQ=255)
                                                      tAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATg                                                                                               <  2:874845/150‑1 (MQ=255)
                                                         ttGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGa                                                                                            >  1:299028/1‑150 (MQ=255)
                                                         ttGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGa                                                                                            >  4:425420/1‑150 (MQ=255)
                                                          taaTTTAATTAAAAATAAATTATATCGGTATGTAAAAATCCGCAATGTACAAAAACCGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGaa                                                                                           <  4:245487/148‑1 (MQ=255)
                                                          taaTTTAATAAAAAATAAATCATATCGGAATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGaa                                                                                           <  2:712252/148‑1 (MQ=255)
                                                           gATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGaaa                                                                                          <  4:370738/150‑1 (MQ=255)
                                                            aTTTAATTAAAAATAAATCATAACGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGaaaa                                                                                         >  2:119785/1‑150 (MQ=255)
                                                             tttAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAAt                                                                                        <  2:542170/150‑1 (MQ=255)
                                                             tttAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAAt                                                                                        <  1:560903/150‑1 (MQ=255)
                                                              ttaattaaAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATg                                                                                       >  1:886402/1‑150 (MQ=255)
                                                               taattaaAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGc                                                                                      <  1:194567/150‑1 (MQ=255)
                                                               taattaaAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGc                                                                                      <  3:561375/150‑1 (MQ=255)
                                                                aattaaAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCa                                                                                     <  2:478752/150‑1 (MQ=255)
                                                                aataaaAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCa                                                                                     <  4:529244/150‑1 (MQ=255)
                                                                 attaaAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAg                                                                                    <  1:243039/150‑1 (MQ=255)
                                                                  ttaaAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGa                                                                                   >  2:541061/1‑150 (MQ=255)
                                                                  ttaaAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGa                                                                                   >  3:323995/1‑150 (MQ=255)
                                                                   taaAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGAt                                                                                  >  2:752464/1‑150 (MQ=255)
                                                                   taaAAATAAATCATATCGGCATGTAAAAATCCACAATATACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGAt                                                                                  >  4:486903/1‑150 (MQ=255)
                                                                            atCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATgag                                                                         <  4:233125/150‑1 (MQ=255)
                                                                                 atCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCa                                                                    >  3:292292/1‑150 (MQ=255)
                                                                                   cGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACt                                                                  >  2:844430/1‑150 (MQ=255)
                                                                                     gCATGTAAAAATCCACAATGTACAAAATACGTGTCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGc                                                                >  2:182883/1‑150 (MQ=255)
                                                                                       aTGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCtt                                                              <  2:363214/150‑1 (MQ=255)
                                                                                        tGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATcc                                                                     >  3:180980/1‑142 (MQ=255)
                                                                                        tGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATcc                                                                     <  4:180980/142‑1 (MQ=255)
                                                                                        tGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATcc                                                                     >  3:181000/1‑142 (MQ=255)
                                                                                        tGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATcc                                                                     <  4:181000/142‑1 (MQ=255)
                                                                                         gTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTc                                                            <  1:417311/150‑1 (MQ=255)
                                                                                         gTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTc                                                            <  2:303886/150‑1 (MQ=255)
                                                                                          tAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCa                                                           <  2:580927/150‑1 (MQ=255)
                                                                                           aaaaaTCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGa                                                                                            >  1:332245/1‑116 (MQ=255)
                                                                                           aaaaaTCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGa                                                                                            <  2:332245/116‑1 (MQ=255)
                                                                                             aaaTCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTAAtct                                                        >  1:695615/1‑150 (MQ=255)
                                                                                              aaTCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCAtctc                                                       <  2:497846/150‑1 (MQ=255)
                                                                                                tCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCa                                                     <  3:175463/150‑1 (MQ=255)
                                                                                                 ccACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCAt                                                    <  4:501450/150‑1 (MQ=255)
                                                                                                 ccACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCAt                                                    >  4:250574/1‑150 (MQ=255)
                                                                                                 ccACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCAt                                                    <  2:419111/150‑1 (MQ=255)
                                                                                                  cacaATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCAtt                                                   <  1:121457/150‑1 (MQ=255)
                                                                                                  cacaATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCAtt                                                   <  3:372901/150‑1 (MQ=255)
                                                                                                     aaTGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAAc                                                >  3:457552/1‑150 (MQ=255)
                                                                                                     aaTGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAAc                                                <  2:299028/150‑1 (MQ=255)
                                                                                                     aaTGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAAc                                                <  1:168686/150‑1 (MQ=255)
                                                                                                     aaTGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTACATTAAc                                                >  3:79923/1‑150 (MQ=255)
                                                                                                         tACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATcc                                            <  4:396355/150‑1 (MQ=255)
                                                                                                         tACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTTATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATcc                                            <  1:825715/150‑1 (MQ=255)
                                                                                                         tACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATcc                                            <  3:355860/150‑1 (MQ=255)
                                                                                                            aaaaaaCGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCAt                                         >  2:52420/1‑150 (MQ=255)
                                                                                                             aaaaaCGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCAtt                                        <  3:497788/150‑1 (MQ=255)
                                                                                                             aaaaaCGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCAtt                                        <  3:497865/150‑1 (MQ=255)
                                                                                                             aaaaaCGAGCCGTTACGGAAGATTTTATCTACAACAACTTACTAGATAAAAATTTTTGACTATTTGATTAGTCTTATCCCGCGATATACATCATTCGAAAGTGCAGATGGCAATGAGATGCAGTGCTTTCATCTCGATTAACATCCCAtt                                        >  2:173205/1‑150 (MQ=255)
                                                                                                              aaaaCGAGCCGTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTa                                       >  1:787212/1‑150 (MQ=255)
                                                                                                                      ccGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTtta                               >  3:511833/1‑150 (MQ=255)
                                                                                                                      ccGTTACGGAATATTTTATCTAAAAAAACTAACTAAATAAAATTTTTTGACTAATTGATTAGTCATAGCCAGCGATATACGCGATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGTTTtta                               >  4:23165/1‑150 (MQ=255)
                                                                                                                       cGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGATAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTttat                              <  2:67990/150‑1 (MQ=255)
                                                                                                                        gTTACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTttatt                             <  1:469328/150‑1 (MQ=255)
                                                                                                                        gTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTttatt                             >  4:323687/1‑150 (MQ=255)
                                                                                                                         ttACGGAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAAAATCACATTACGCTTttatta                            >  2:676797/1‑150 (MQ=255)
                                                                                                                          tACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTaa                           <  4:199859/150‑1 (MQ=255)
                                                                                                                              gAATATTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAg                       <  4:147790/150‑1 (MQ=255)
                                                                                                                                  atTTTATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCAtt                   <  1:418141/150‑1 (MQ=255)
                                                                                                                                  atTTTATCTACAAAAACTGACTAAATAAAAATTTTTTTTTTTTTTGTTAGTCATAAACAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTATCATCCCATTACGATTTTATTAAGGAGCAtt                   >  2:40079/1‑150 (MQ=255)
                                                                                                                                   ttttATCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCCTAGACAGCGATATCCGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCATTa                  <  3:196662/150‑1 (MQ=255)
                                                                                                                                     ttATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCATTAGc                <  1:119785/150‑1 (MQ=255)
                                                                                                                                        tCTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCATTAGCATg             <  1:844430/150‑1 (MQ=255)
                                                                                                                                        tCTACAAAAACGGACTAAATAAGAATTTTTCAATGGTGGATTAGGAATAGCCAACAATGTGCGCTATGCGAAAACGCAGATGGCAATGAGATCCACTGCTTTCATCCCCATTAACATCCCATTACGCTTTTATTAAGGAGCATTAGCATg             <  2:695615/150‑1 (MQ=255)
                                                                                                                                         cTACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCATTAGCATGt            <  2:494450/150‑1 (MQ=255)
                                                                                                                                          tACAAAAACTTACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATTGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCATTAGCATGtt           <  1:541061/150‑1 (MQ=255)
                                                                                                                                            cAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCATTAGCATGTtct         >  4:182770/1‑150 (MQ=255)
                                                                                                                                                aaCTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCATTAGCATGTTCTCAcc     >  2:328648/1‑150 (MQ=255)
                                                                                                                                                   tGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCATTAGCATGTTCTCACCGCa  <  4:42577/150‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
AGCGTTACCTCACCCCCAAACTTTCATTAGTGATATTAAAGGTAAGGCCATATCTAATTGATTTAATTAAAAATAAATCATATCGGCATGTAAAAATCCACAATGTACAAAAAACGAGCCGTTACGGAATATTTTATCTACAAAAACTGACTAAATAAAAATTTTTCACTAATTGATTAGTCATAGCCAGCGATATACGCTATGCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCATTAGCATGTTCTCACCGCA  >  NC_000913_3_pae_pgi/2798881‑2799177

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑