| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_pgi | 4,295,320 | 0 | C | T | 31.4% | 118.5 / 62.4 | 87 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Reads supporting (aligned to +/- strand): ref base C (34/25); new base T (17/10); total (52/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.13e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGC > NC_000913_3_pae_pgi/4295173‑4295466 | tCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGc < 1:298436/150‑1 (MQ=32) ggATAAGGCGTTTATGCCGCATCCGACATCAACGCATGATGCGACGCTTAACGCGTCTTATCCGGCCTACGACAGGCTGTGCGTTAGACTGCTTTAGCCTGA‑CTTTTTAGATTGTATATCGCATTTACGCTGCATCAGACATCAATGCCt > 1:803020/1‑150 (MQ=2) gTTTATCCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACg > 2:786861/1‑150 (MQ=17) tGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTTTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATGTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGATTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGc < 1:877694/150‑1 (MQ=255) gCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGGAATAGCCTGATTGAGCGTGA‑TTTTGTAGGTCGGAGAAGGCGTGTACGCCGCATCCGGCAGCAACGCCTGAAGCGACGCTTGcc > 4:262614/1‑150 (MQ=11) gCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGcc < 1:37324/150‑1 (MQ=35) cGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcgc > 4:373129/1‑150 (MQ=21) cGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcgc > 2:176558/1‑150 (MQ=21) cGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcgc < 3:366924/150‑1 (MQ=21) cgcactgcATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCCTCCGACATCAACGCCTGATGCGACGCTTGCCGCGt < 2:294834/143‑1 (MQ=255) cATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGt > 1:88102/1‑150 (MQ=37) aTCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTc > 1:832167/1‑150 (MQ=25) ccGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCtt > 3:319127/1‑150 (MQ=21) gACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGGAATAGCCGGAGGGATCAGGATTTTTGTCGGT‑GCGGAAGTCCGTTACGCCGCATCCGACATCAACGCCGTATGCGATTCTTTCCGCGTCttcg > 1:668286/1‑148 (MQ=2) gtaggCCTGATAAGACGCGTTAAGCGTCGCATCAGGCATACGCCAGACAGCGCAATGGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc > 2:574586/5‑150 (MQ=11) aaCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAAc > 1:229632/1‑116 (MQ=33) aaCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc > 4:393451/1‑150 (MQ=25) aCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCt < 3:101577/150‑1 (MQ=38) aCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCAAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcgc < 2:698617/136‑1 (MQ=19) aCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCAAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcgc > 1:698617/1‑136 (MQ=25) gCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTat > 1:143899/1‑149 (MQ=18) gCCTGATAAGACGCGTTAAGCGTCGCATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTat > 2:858696/1‑149 (MQ=11) cTGATCCGAAGCTTAACGTGTCTTATGAGGCCTAAGTCATGCGGAACAATGGTAAGACTTAGCGTCA‑TTTAGTAAATCGGACAAGGCGTTTCCGCCGCATACGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGc < 2:143465/150‑1 (MQ=2) tGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTatctt > 2:18463/1‑146 (MQ=17) gATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTatctta > 1:74003/1‑145 (MQ=2) gATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCa < 3:13715/150‑1 (MQ=39) gACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCTAGACAg > 1:4494/1‑150 (MQ=38) gCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCt < 3:184457/105‑1 (MQ=33) aCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACGCCAGa > 3:380270/1‑139 (MQ=17) cgcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGc < 1:396227/150‑1 (MQ=38) gcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGcc < 1:694944/150‑1 (MQ=39) gTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTg < 4:333698/150‑1 (MQ=39) cTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGc < 2:346871/92‑1 (MQ=34) cTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATg > 1:780409/1‑98 (MQ=33) cTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATg < 2:780409/98‑1 (MQ=34) tATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCtt > 4:110449/1‑114 (MQ=9) tATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCtt < 3:110449/114‑1 (MQ=25) aTCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGcc < 2:221233/90‑1 (MQ=18) aTCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACAGCAATGcc > 1:221233/1‑90 (MQ=255) cAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGc < 3:194044/150‑1 (MQ=39) ggCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGc > 4:412538/1‑101 (MQ=25) ggCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGc < 3:412538/101‑1 (MQ=25) gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAAGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATATCCTGATTTAGCGTg > 3:477045/1‑150 (MQ=255) cTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAt > 3:59794/1‑150 (MQ=39) cTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAAGACCGAAAAGGCGTCTTGGCGGGATCGAACATCAAGGAGTGAGTAGACCCCGGCCGCGGCTTATTCGGCCTACGCCAAACAGCGCAATAGCCTGATTTAGCGTGAt > 4:262048/1‑150 (MQ=2) gCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTg > 4:190295/1‑150 (MQ=38) gCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACACCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTg > 4:17912/1‑150 (MQ=38) ccAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGt < 1:190533/150‑1 (MQ=39) aGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCg < 4:114433/150‑1 (MQ=38) gcAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGAt > 2:667178/1‑150 (MQ=38) gcAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCGTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGAt < 1:247075/150‑1 (MQ=37) tAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAg < 2:652478/93‑1 (MQ=255) tAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAg > 1:652478/1‑93 (MQ=255) ccTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGCCGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGCTTTAGCGTGATTTTGTAGGTCGGATAAGGCGt > 3:431327/1‑150 (MQ=255) cTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGtt > 4:250128/1‑150 (MQ=38) tGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACACCGCATCCGACATCAACGCCTGATGCGACGCtt > 4:350364/1‑73 (MQ=255) tGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACACCGCATCCGACATCAACGCCTGATGCGACGCtt < 3:350364/73‑1 (MQ=25) gATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTa < 1:269369/150‑1 (MQ=38) tAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGcc < 3:476559/150‑1 (MQ=39) tAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGAGGCGATTGACGCGTCTTATAAGGCCTACGACAGCCCGCGCAATAGAATGATTTGGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGcc < 3:371799/150‑1 (MQ=11) tAGCGTGA‑ATTAGTAGGACGGCCAAGGCGTTTACGCCCCGTACGACGTCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACTCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGcc < 4:382844/150‑1 (MQ=11) aGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACCCCAGACAGCGCAATAGCCTGCTTTCGCGTGATTTTGTAGGTCGGATCCGGCGTTTCTGCCg > 2:746801/1‑150 (MQ=14) cGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCtt < 1:103671/65‑1 (MQ=255) cGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCtt > 2:103671/1‑65 (MQ=37) gTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTAATGCCGCAt > 4:535363/1‑150 (MQ=37) gA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATcc < 1:144412/150‑1 (MQ=37) a‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGt > 4:98602/1‑68 (MQ=255) a‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGt < 3:98602/68‑1 (MQ=255) tgaGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATc > 1:360793/3‑150 (MQ=38) gTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATc > 1:818307/1‑150 (MQ=39) gTAGGTCGGATAAGGCGTTTACACCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATc < 3:17912/150‑1 (MQ=38) ggTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAgg > 3:84166/1‑69 (MQ=16) gTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTATATGCCGAATCCGACATCAACg > 1:29978/1‑150 (MQ=255) gATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACCCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATACGTCGTTTACGCCGCAGCCGACCTCAACCCCTg > 4:559403/1‑150 (MQ=11) aTAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGt < 2:126471/110‑1 (MQ=40) aTAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGt > 1:126471/1‑110 (MQ=40) aaGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATg < 1:667178/150‑1 (MQ=39) ggCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAg < 2:519242/73‑1 (MQ=255) ggCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAg > 1:519242/1‑73 (MQ=255) gCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCAGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTGTGCCGCATCCGACATCAACGCCCGCTGCgg > 4:252469/1‑149 (MQ=255) aCGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCAGATCGGACCTACGCCCGTCAGCGCTCCAGCCAGGTTTAACGTGATCTTGTACGTCGGATAAGTCGAAAAAAACGCATCCGACATCAACGCCTGATGCGACGCTTa > 1:39726/1‑150 (MQ=2) gccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAAc > 2:321538/1‑150 (MQ=35) gccgcATCCGACATCAACGCCTGATGCGACGCTTGCCACGTCGGATCAGGCCTGCGCCGGGCAGCGGAATAGCCCGGTTTGTCGATATTGTGTAGCGCGGAAAAGGCGATTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAAc > 2:877694/1‑150 (MQ=11) ccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGACTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAAcg > 1:764382/1‑150 (MQ=25) cgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAAcgc > 1:510164/1‑150 (MQ=35) gcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAAcgcg > 3:420063/1‑150 (MQ=35) tCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCt > 4:306207/1‑150 (MQ=35) cAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGc > 4:134288/1‑150 (MQ=32) | TCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGC > NC_000913_3_pae_pgi/4295173‑4295466 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |