New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 4150413	7 (0.430)	6 (0.400)	6/234	1.1	39.4%	intergenic (‑148/+34)	eptC/ppc	LPS heptose I phosphoethanolamine transferase/phosphoenolpyruvate carboxylase
	?	NC_000913_3_pae_pgi	= 4150423	12 (0.800)					intergenic (‑158/+24)	eptC/ppc	LPS heptose I phosphoethanolamine transferase/phosphoenolpyruvate carboxylase

ATAGTAAGAACCTGTCTTGAAAAAATATCGCCGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCTGGCCTTCTTTTTCTGCCTG  >  NC_000913_3_pae_pgi/4150264‑4150545                                                                                                                                                      |                                                                                                                                     aTAGTAAGAACCTGTCTTGAAAAAATATCGCCGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCG                                                                                                                                      >  1:68222‑M1/1‑150 (MQ=255)                            tCGCCGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCagaaga                                                                                                           <  2:68222/150‑1 (MQ=255)                               ccGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGtgcttttgcgcgagggttttctgaaatact                                                                                                        >  1:150217‑M1/1‑120 (MQ=255)                               ccGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGa                                                                                                        >  3:9035/1‑150 (MQ=255)                                   aTGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGtgcttttgcgcgagggttttctgaaatacttctg                                                                                                    <  2:69116‑M1/150‑35 (MQ=255)                                                                   gTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCAcgagggttttctga                                                                                                              <  1:100123‑M2/108‑15 (MQ=255)                                                                   gTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCAcgagggttttctga                                                                                                              >  2:100123‑M2/1‑94 (MQ=255)                                                                                             agacagaAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGtt                                          >  3:41669/1‑150 (MQ=255)                                                                                                        tatTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGtgcttttgcgcgagggttttctgaaatacttct                                                                                                     >  1:97003‑M1/1‑47 (MQ=255)                                                                                                        tatTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGtgcttttgcgcgagggttttctgaaatacttct                                                                                                     <  2:97003‑M1/80‑34 (MQ=255)                                                                                                                             aaCAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCTGGCCTTCtttt          >  1:173394/1‑150 (MQ=255)                                                                                                                               cAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCAcgagggttttctgaaatacttctgttctaacaccctcgttttcaatatatttctgtctgcattttattcaaattctgaatataccttcagatatccttaaggaattgtcgttacat        <  2:69116‑M2/150‑117 (MQ=255)                                                                                                                               cAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCTGGCCTTCTTTTTc        >  2:54404/1‑150 (MQ=255)                                                                                                                                aGAAGTATTTCAGAAAACCCTCGCGCAAAAGCAcgagggttttctgaaatacttctgttctaacaccctcgttttcaata                                                                             >  1:97003‑M2/1‑33 (MQ=255)                                                                                                                                aGAAGTATTTCAGAAAACCCTCGCGCAAAAGCAcgagggttttctgaaatacttctgttctaacaccctcgttttcaata                                                                             <  2:97003‑M2/80‑48 (MQ=255)                                                                                                                                aGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCTGGCCTTCTTTTTCt       >  1:111390/1‑150 (MQ=255)                                                                                                                                   aGTATTTCAGAAAACCCTCGCGCAAAAGCAcgagggttttctgaaatacttctgttctaacaccctcgttttcaatatatttctgtctgcattttattcaaattctgaatataccttcagatatccttaaggaattgtcgttacattcgg    >  1:150217‑M2/1‑30 (MQ=255)                                                                                                                                     tATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCTGGCCTTCTTTTTCTGCCTg  >  4:117641/1‑150 (MQ=255)                                                                                                                                         tCAGAAAACCCTCGtgcttttgcgcgagggttttctgaaatacttctgttctaacaccctcgttttcaatatatttctgtctgcattttattcaaattctgaatatac                                        >  2:100123‑M1/1‑14 (MQ=255)                                                                                                                                         tCAGAAAACCCTCGtgcttttgcgcgagggttttctgaaatacttctgttctaacaccctcgttttcaatatatttctgtctgcattttattcaaattctgaatatac                                        <  1:100123‑M1/108‑95 (MQ=255)                                                                                                                                                      |                                                                                                                                     ATAGTAAGAACCTGTCTTGAAAAAATATCGCCGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCTGGCCTTCTTTTTCTGCCTG  >  NC_000913_3_pae_pgi/4150264‑4150545

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.