New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 4533399	11 (0.680)	3 (0.200)	3/232	1.8	19.9%	intergenic (‑86/+291)	yjhX/yjhZ	UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment
	?	NC_000913_3_pae_pgi	= 4533420	14 (0.940)					intergenic (‑107/+270)	yjhX/yjhZ	UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment
Rejected: Frequency below/above cutoff threshold.

AGCGAGAACGTGTAAGGTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGT  >  NC_000913_3_pae_pgi/4533269‑4533544                                                                                                                                   |                                                                                                                                                  aGCGAGAACGTGTAAGGTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCggg                                                                                                                                <  2:66278/150‑1 (MQ=255)                  tATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGCCGCATTGATAATCAGTtccccgaccttttcaggccggactgcttatcaatgc                                                                                                               >  1:154192‑M1/1‑114 (MQ=255)                                         ttCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATGaa                                                                                           >  1:52441/1‑147 (MQ=255)                                         ttCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATGaa                                                                                           <  2:52441/147‑1 (MQ=255)                                                                           aaaaCGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGaa                                                      >  1:102714/1‑150 (MQ=255)                                                                                  gCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAac                                               >  1:162101/1‑150 (MQ=255)                                                                                  gCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAac                                               <  2:102714/150‑1 (MQ=255)                                                                                      acacacCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTtccccgaccttttcaggccggactgatt                                                                                                                       >  4:89282‑M1/1‑46 (MQ=255)                                                                                      acacacCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTtccccgaccttttcaggccggactgatt                                                                                                                       <  3:89282‑M1/74‑29 (MQ=255)                                                                                          acCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGtt                                       >  1:15120/1‑150 (MQ=255)                                                                                            cgcgGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACa                                                                                                         <  3:22430/82‑1 (MQ=255)                                                                                            cgcgGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACa                                                                                                         >  4:22430/1‑82 (MQ=255)                                                                                            cgcgGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTtat                                     <  2:126452/150‑1 (MQ=255)                                                                                                                     gcATTGATAAGCAGTCCGGCCTGAAAAGGTCGGGGAactgattatcaatgcggcgaaatcgaatgcggacaccgcggtgtgtttgcacgttttgcacatgatgattaaataggttcttcagtatgaatttatcccgtcaggaacaacata            >  1:154192‑M2/1‑36 (MQ=255)                                                                                                                             aaTCAGTCCGGCCTGAAAAGGTCGGGGAactgattatcaatgcgccgaaatcgaatgcggacaccgcggtgtgt                                                                                <  3:89282‑M2/74‑47 (MQ=255)                                                                                                                             aaTCAGTCCGGCCTGAAAAGGTCGGGGAactgattatcaatgcgccgaaatcgaatgcggacaccgcggtgtgt                                                                                >  4:89282‑M2/1‑28 (MQ=255)                                                                                                                               tCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGt  >  2:75899/1‑150 (MQ=255)                                                                                                                                   |                                                                                                                                                  AGCGAGAACGTGTAAGGTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGT  >  NC_000913_3_pae_pgi/4533269‑4533544

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.