New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 218219	9 (0.560)	4 (0.260)	4/238	1.6	31.4%	coding (557/1719 nt)	proS	prolyl‑tRNA synthetase
	?	NC_000913_3_pae_pgi	= 218236	9 (0.590)					coding (540/1719 nt)	proS	prolyl‑tRNA synthetase

GTGTCGGAGAAGACCACATCGTCTTCACCGCTCTGCGCCAGCACCTGGAATTCGTGAGAGGCGCTGCCGCCGATAGAACCGGTGTCGGCTTGTACGGCGCGGAAATCCAGCCCCATGCGGCTGAAGATTTTGCTGTAGGCCGCATACATTGCATCGTAGGTTTCCTGCAGGGATTCCTGAGAAGTATGGAAAGAGTAAGCATCTTTCATCAGGAATTCGCGGGAACGCATGACGCCGAAACGCGGACGCACT  >  NC_000913_3_pae_pgi/218099‑218350                                                                                                                         |                                                                                                                                    gtgtCGGAGAAGACCACATCGTCTTCACCGCTCTGCGCCAGCACCTGGAATTCGTGAGAGGCGCTGCCGCCGATAGAACCGGTGTCGGCTTGTACGGCGCGGAAATCCAGCCCCATGCGGCTGAAGATTTTGCTGTAGGCCGCATACAtt                                                                                                        <  2:76161/150‑1 (MQ=255)                         tCACCGCTCTGCGCCAGCACCTGGAATTCGTGAGAGGCGCTGCCGCCGATAGAACCGGTGTCGGCTTGTACGGCGCGGAAATCCAGCCCCATGCGGCctacagcaaaatcttcagccgcatggggct                                                                                                       <  1:33582‑M1/127‑31 (MQ=255)                         tCACCGCTCTGCGCCAGCACCTGGAATTCGTGAGAGGCGCTGCCGCCGATAGAACCGGTGTCGGCTTGTACGGCGCGGAAATCCAGCCCCATGCGGCctacagcaaaatcttcagccgcatggggct                                                                                                       >  2:33582‑M1/1‑97 (MQ=255)                               ctctGCGCCAGCACCTGGAATTCGTGAGAGGCGCTGCCGCCGATAGAACCGGTGTCGGCTTGTACGGCGCGGAAATCCAGCCCCATGCGGCTGAAGATTTTGCTGTAGGCCGCATACATTGCATCGTAGGTTTCCTGCAGGGATTCCTga                                                                          <  3:49333/150‑1 (MQ=255)                                       cAGCACCTGGAATTCGTGAGAGGCGCTGCCGCCGATAGAACCGGTGTCGGCTTGTACGGCGCGGAAATCCAGCCCCATGCGGCTGAAGATTTTGCTGTAGGCCGCATACATTGCATCGTAGGTTTCCTGc                                                                                      <  1:83453/130‑1 (MQ=255)                                       cAGCACCTGGAATTCGTGAGAGGCGCTGCCGCCGATAGAACCGGTGTCGGCTTGTACGGCGCGGAAATCCAGCCCCATGCGGCTGAAGATTTTGCTGTAGGCCGCATACATTGCATCGTAGGTTTCCTGc                                                                                      >  2:83453/1‑130 (MQ=255)                                             cTGGAATTCGTGAGAGGCGCTGCCGCCGATAGAACCGGTGTCGGCTTGTACGGCGCGGAAATCCAGCCCCATGCGGCctacagcaaaatcttcagccgcatggggctgg                                                                                                     <  1:40088‑M1/109‑33 (MQ=255)                                             cTGGAATTCGTGAGAGGCGCTGCCGCCGATAGAACCGGTGTCGGCTTGTACGGCGCGGAAATCCAGCCCCATGCGGCctacagcaaaatcttcagccgcatggggctgg                                                                                                     >  2:40088‑M1/1‑77 (MQ=255)                                               ggAATTCGTGAGAGGCGCTGCCGCCGATAGAACCGGTGTCGGCTTGTACGGCGCGGAAATCCAGCCCCATGCGGCTGAAGATTTTGCTGTAGGCCGCATACATTGCATCGTAGGTTTCCTGCAGGGATTCCTGAGAAGTATGGAAAGAGt                                                          >  1:126731/1‑150 (MQ=255)                                                                               ccGGTGTCGGCTTGTACGGCGCGGAAATCCAGCCCCATGCGGCTGAAGATTTTGCTGTAGGCCGCATACATTGCATCGTAGGTTTCCTGCAGGGATTCCTGAGAAGTATGGAAAGAGTAAGCATCTTTCATCAGGAATTCGCGGGAACGc                          <  4:24330/150‑1 (MQ=255)                                                                                                    cgGAAATCCAGCCCCATGCGGCTGAAGATTTTGCTGTAGGCCGCATACATTGCATCGTAGGTTTCCTGCAGGGATTCCTGAGAAGTATGGAAAGAGTAAGCATCTTTCATCAGGAATTCGCGGGAACGCATGa                      <  1:26655/133‑1 (MQ=255)                                                                                                    cgGAAATCCAGCCCCATGCGGCTGAAGATTTTGCTGTAGGCCGCATACATTGCATCGTAGGTTTCCTGCAGGGATTCCTGAGAAGTATGGAAAGAGTAAGCATCTTTCATCAGGAATTCGCGGGAACGCATGa                      >  2:26655/1‑133 (MQ=255)                                                                                                       aaaTCCAGCCCCATGCGGCTGAAGATTTTGCTGTAGGCCGCATACATTGCATCGTAGGTTTCCTGCAGGGATTCCTGAGAAGTATGGAAAGAGTAAGCATCTTTCATCAGGAATTCGCGGGAACGCATGACGCCGAAACGCGGACGCACt  <  4:35581/150‑1 (MQ=255)                                                                                                           ccAGCCCCATGCGGCTGAAGATTTTGCTGTAGgccgcatggggctggatttccgcgccgtacaagccgacaccggttctatcggcggcagcgcctctcacgaattccag                                       >  2:40088‑M2/1‑32 (MQ=255)                                                                                                           ccAGCCCCATGCGGCTGAAGATTTTGCTGTAGgccgcatggggctggatttccgcgccgtacaagccgacaccggttctatcggcggcagcgcctctcacgaattccag                                       <  1:40088‑M2/109‑78 (MQ=255)                                                                                                             aGCCCCATGCGGCTGAAGATTTTGCTGTAGgccgcatggggctggatttccgcgccgtacaagccgacaccggttctatcggcggcagcgcctctcacgaattccaggtgctggcgcagagcggtga                   >  2:33582‑M2/1‑30 (MQ=255)                                                                                                             aGCCCCATGCGGCTGAAGATTTTGCTGTAGgccgcatggggctggatttccgcgccgtacaagccgacaccggttctatcggcggcagcgcctctcacgaattccaggtgctggcgcagagcggtga                   <  1:33582‑M2/127‑98 (MQ=255)                                                                                                                         |                                                                                                                                    GTGTCGGAGAAGACCACATCGTCTTCACCGCTCTGCGCCAGCACCTGGAATTCGTGAGAGGCGCTGCCGCCGATAGAACCGGTGTCGGCTTGTACGGCGCGGAAATCCAGCCCCATGCGGCTGAAGATTTTGCTGTAGGCCGCATACATTGCATCGTAGGTTTCCTGCAGGGATTCCTGAGAAGTATGGAAAGAGTAAGCATCTTTCATCAGGAATTCGCGGGAACGCATGACGCCGAAACGCGGACGCACT  >  NC_000913_3_pae_pgi/218099‑218350

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.