| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | = 1286639 | NA (NA) | 6 (0.390) | 6/242 | 1.1 | NA | noncoding (46/72 nt) | REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_pae_pgi | = 1286665 | NA (NA) | noncoding (72/72 nt) | REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
TAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGC > NC_000913_3_pae_pgi/1286496‑1286788 | tAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCgg < 4:51589/150‑1 (MQ=255) gcTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGGCaccatg > 1:88079/1‑145 (MQ=255) gCGAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTc > 3:83651/1‑150 (MQ=255) gTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAg > 2:26592/1‑150 (MQ=255) tttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGgcccgatggcaccacgtttaccgggc > 1:189218‑M1/1‑76 (MQ=255) tttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGgcccgatggcaccacgtttaccgggc < 2:189218‑M1/102‑27 (MQ=255) ggCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGaa > 1:35785/1‑150 (MQ=255) gTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTa > 3:28667/1‑150 (MQ=255) ttGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTgcg > 4:42898/1‑150 (MQ=255) ttGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTgcg > 1:102808/1‑150 (MQ=255) gTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGgcccgatggcaccacgtttaccgggcc > 1:68235‑M1/1‑46 (MQ=255) gTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGgcccgatggcaccacgtttaccgggcc < 2:68235‑M1/73‑28 (MQ=255) gcttcgcttATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGa > 1:43982/1‑124 (MQ=255) gcttcgcttATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGa < 2:43982/124‑1 (MQ=255) ttcgcttATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTc < 4:83651/150‑1 (MQ=255) gcttATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACa > 2:180835/1‑78 (MQ=255) gcttATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACa < 1:180835/78‑1 (MQ=255) cttATCCGACCTACAGGGGAGGATATTGTAGgcccgatggcaccacgtttaccgg > 2:182465‑M1/1‑31 (MQ=255) cttATCCGACCTACAGGGGAGGATATTGTAGgcccgatggcaccacgtttaccgg < 1:182465‑M1/55‑25 (MQ=255) tCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGtt < 2:35785/150‑1 (MQ=255) gACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGG < 2:199730‑M2/49‑1 (MQ=255) gACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGG > 1:199730‑M2/1‑49 (MQ=255) aCAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTc > 3:70399/1‑127 (MQ=255) aCAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTc < 4:70399/127‑1 (MQ=255) gaTATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGc > 3:87748/1‑135 (MQ=255) gaTATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGc < 4:87748/135‑1 (MQ=255) ggCCCGGTAAACGTGGTGCCATCGGGCctacaatatcctcccctgtaggtcggataagcgaagcgcatccgac < 2:68235‑M2/73‑47 (MQ=255) ggCCCGGTAAACGTGGTGCCATCGGGCctacaatatcctcccctgtaggtcggataagcgaagcgcatccgac > 1:68235‑M2/1‑27 (MQ=255) ggCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCTACGCTCTCTCGCTGgc < 2:102808/150‑1 (MQ=255) | TAAGTACCAGCTGGTGCGCGCTCGTCACTAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGC > NC_000913_3_pae_pgi/1286496‑1286788 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |