| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | 1724040 = | 17 (1.050) | 6 (0.390) | 6/238 | 1.1 | 27.9% | coding (1920/2013 nt) | ydhK | putative efflux protein (PET) component of YdhJK efflux pump |
| ? | NC_000913_3_pae_pgi | 1724062 = | 15 (0.980) | coding (1942/2013 nt) | ydhK | putative efflux protein (PET) component of YdhJK efflux pump | |||||
CGATCCGTTATCGCGAGTACGGGATAACTGTATTTCACTGTTGCGGGGAGTGATGAGTGAGCGTGGCGTTCAGCAAAAATCACTGGCGGCCACACTTGAAGAATTACAGCGGATTTGCGACAGCCTTGCCCGTCATCATCAACCTGCCGCCCGTGAGCTGGCGGCAATTGTCTGGCGGCTGTACTGCTCGCTTTCGCAACTTGAGCAAGCACCACCGCAAGGTACGCTGGCCTCTTAATTACTTAATTACACCACAGGCATAGCGTTCACCGCCACCGCCCAGCGGTTTAGG > NC_000913_3_pae_pgi/1723896‑1724187 | gataatatgtccgatcaacctaaaccgctgggcggtggcggtgaacgctatgcctgtggtgtaattaagtaattaagaggccagcgtaccttgcggtggtgcttgctcaagttgcgaaagcgagcagtacagccgccagacaatcgccgc < 2:155746‑M1/6‑1 (MQ=255) cGTTATCGCGAGTACGGGATAACTGTATTTCACTGTTGCGGGGAGTGATGAGTGAGCGTGGCGTTCAGCAAAAATCACTGGCGGCCACACTTGAAGAATTACAGCGGATTTGCGACAGCCTTGCCCGTCATCATCAACCTGCCGCCCGTg < 3:118923/150‑1 (MQ=255) tCGCGAGTACGGGATAACTGTATTTCACTGTTGCGGGGAGTGATGAGTGAGCGTGGCGTTCAGCAAAAATCACTGGCGGCCACACTTGAAGAATTACAGCGGATTTGCGACAGCCTTGCCCGTCATCATCAACCTGCCGCCCGTGAGCTg > 2:1993/1‑150 (MQ=255) tcaacctaagccgctgggcggtggcggtgaacgctatgcctgtggtgtaattaagtaattaagaggccagcgtaccttgcggtggtgcttgctcaggttgcgagagcgagcagtacagccgccagacaatTGCCGCCCGTGAGCTggcgg > 1:148114‑M1/131‑150 (MQ=255) aaCTGTATTTCACTGTTGCGGGGAGTGATGAGTGAGCGTGGCGTTCAGCAAAAATCACTGGCGGCCACACTTGAAGAATTACAGCGGATTTGCGACAGCCTTGCCCGTCATCATCAACCTGCCGCCCGTGAGCTGGCGGCAATTGTCTgg < 1:19735/150‑1 (MQ=255) tGTATTTCACTGTTGCGGGGAGTGATGAGTGAGCGTGGCGTTCAGCAAAAATCACTGGCGGCCACACTTGAAGAATTACAGCGGATTTGCGACAGCCTTGCCCGTCATCATCAACCTGCCGCCCGTGAGCTGGCGGCAATTGTCTggcgg > 1:62156/1‑150 (MQ=255) ttCACTGTTGCGGGGAGTGATGAGTGAGCGTGGCGTTCAGCAAAAATCACTGGCGGCCACACTTGAAGAATTACAGCGGATTTGCGACAGCCTTGCCCGTCATCATCAACCTGCCGCCCGTGAGCTGGCGGCAATTGTCTGGCGGCTGTa < 4:63853/150‑1 (MQ=255) ggtgaacgctatgcctgtggtgtaattaagtaattaagaggccagcgtaccttgcggtggtgcttgctcaagttgcgaaagcgagcagtacagccgccagacaatTGCCGCCCGTGAGCTGGCGGCAATTGTCTGGCGGCTGTACTGc > 2:56511‑M1/106‑148 (MQ=255) ggtgaacgctatgcctgtggtgtaattaagtaattaagaggccagcgtaccttgcggtggtgcttgctcaagttgcgaaagcgagcagtacagccgccagacaatTGCCGCCCGTGAGCTGGCGGCAATTGTCTGGCGGCTGTACTGc < 1:56511‑M1/43‑1 (MQ=255) tgaacgctatgcctgtggtgtaattaagtaattaagaggccagcgtaccttgcggtggtgcttgctcaagttgcgaaagcgagcagtacagccgccagacaatTGCCGCCCGTGAGCTGGCGGCAATTGTCTGGCGGCTGTACTGCTCGc > 1:310‑M1/104‑150 (MQ=255) gAGTGATGAGTGAGCGTGGCGTTCAGCAAAAATCACTGGCGGCCACACTTGAAGAATTACAGCGGATTTGCGACAGCCTTGCCCGTCATCATCAACCTGCCGCCCGTGAGCTGGCGGCAATTGTCTGGCGGCTGTACTGCTCGCTTTCGc > 4:28311/1‑150 (MQ=255) gAGTGATGAGTGAGCGTGGCGTTCAGCAAAAATCACTGGCGGCCACACTTGAAGAATTACAGCGGATTTGCGACAGCCTTGCCCGTCATCATCAACCTGCCGCCCGTGAGCTGGCGGCAATTGTCTGGCGGCTGTACTGCTCGCTTTCGc > 4:28346/1‑150 (MQ=255) agtgagCGTGGCGTTCAGCAAAAATCACTGGCGGCCACACTTGAAGAATTACAGCGGATTTGCGACAGCCTTGCCCGTCATCATCAACCTGCCGCCCGTGAGCTGGCGGCAATTGTCTGGCGGCTGTACTGCTCGCTTTCGCAACTTGag < 1:1993/150‑1 (MQ=255) agCGTGGCGTTCGGCAAAAATCACTGGCGGCCACACTTGAAGAATTACAGCGGATTTGCGACAGCCTTGCCCGTCATCATCAACCTGCCGCCCGTGAGCTGGCGGCAATTGTCTGGCGGCTGTACTGCTCGCTTTCGCAACTTGagcaag > 4:289/1‑150 (MQ=255) gCAAAAATCACTGGCGGCCACACTTGAAGAATTACAGCGGATTTGCGACAGCCTTGCCCGTCATCATCAACCTGCCGCCCGTGAGCTGGCGGCAATTGTCTGGCGGCTGTACTGCTCGCTTTCGCAACTTGAGCAAGCACCACCGCAAgg > 2:31952/1‑150 (MQ=255) tCACTGGCGGCCACACTTGAAGAATTACAGCGGATTTGCGACAGCCTTGCCCGTCATCATCAACCTGCCGCCCGTGAGCTGGCGGCAATTGTCTGGCGGCTGTACTGCTCGCTTTCGCAACTTGAGCAAGCACCACCGCAAGGTACGCTg < 3:48487/150‑1 (MQ=255) aGCGGATTTGCGACAGCCTTGCCCGTCATCATCAACCTGCCGCCCGTGAGCTGGCGGCAATTGTCTGGCGGCTGTACTGCTCGCTTTCGCAACTTGAGCAAGCACCACCGCAAGGTACGCTGGCCTCTTAATTACTTAATTACACCACAg > 4:37141/1‑150 (MQ=255) cGGATTTGCGACAGCCTTGCCCGTCATCATCAACCTGCCGCCCGTGAGCTGGCGGCAATTGTCTGGCGGCTGTACTGCTCGCTTTCGCAACTTGAGCAAGCACCACCGCAAGGTACGCTGGCCTCTTAATTACTTAATTACACCACAGGc < 3:28311/150‑1 (MQ=255) cGGATTTGCGACAGCCTTGCCCGTCATCATCAACCTGCCGCCCGTGAGCTGGCGGCAATTGTCTGGCGGCTGTACTGCTCGCTTTCGCAACTTGAGCAAGCACCACCGCAAGGTACGCTGGCCTCTTAATTACTTAATTACACCACAGGc < 3:28346/150‑1 (MQ=255) tcatcaACCTGCCGCCGGTGAGCTGGCGGCAATTGTCTGGCGGCTGTACTGCTCGCTTTCGCAACTTGAGCAAGCACCACCGCAAGGTACGCTGGCCTCTTAATTACTTAATTACACCACAGGCATAGCGTTCACCGCCACCGCCCAGCg > 3:98740/1‑150 (MQ=255) ccTGCCGCCCGTGAGCTGGCGGCAATTGTCTGGCGGCTGTACTGCTCGCTTTCGCAACTTGAGCAAGCACCACCGCAAGGTACGCTGGCCTCTTAATTACTTAATTACACCACAGGCATAGCGTTCACCGCCACCGCCCAGCGGTTTAgg < 1:31952/150‑1 (MQ=255) ccTGCCGCCCGTGAGCTGGCGGCAATTGTCTGGCGGCTGTACTGCTCGCTTTCGCAACTTGAGCAAGCACCACCGCAAGGTACGCTGGCCTCTTAATTACTTAATTACACCACAGGCATAGCGTTCACCGCCACCGCCCAGCGGTTTAgg < 4:89803/150‑1 (MQ=255) tTGCCGCCCGTGAGCTGGCGGCAATTGTCTGGCGGCTGTACTGCTCGCTTTCGCAACTTGAGCAAGCACCACCGCAAGGTACGCTGGCCTCTTAATTACTTAATTACACCACAGGCATAGCGTTCACCGCCACCGCCCAGCg < 2:199884‑M1/141‑1 (MQ=255) tTGCCGCCCGTGAGCTGGCGGCAATTGTCTGGCGGCTGTACTGCTCGCTTTCGCAACTTGAGCAAGCACCACCGCAAGGTACGCTGGCCTCTTAATTACTTAATTACACCACAGGCATAGCGTTCACCGCCACCGCCCAGCg > 1:199884‑M1/2‑142 (MQ=255) | CGATCCGTTATCGCGAGTACGGGATAACTGTATTTCACTGTTGCGGGGAGTGATGAGTGAGCGTGGCGTTCAGCAAAAATCACTGGCGGCCACACTTGAAGAATTACAGCGGATTTGCGACAGCCTTGCCCGTCATCATCAACCTGCCGCCCGTGAGCTGGCGGCAATTGTCTGGCGGCTGTACTGCTCGCTTTCGCAACTTGAGCAAGCACCACCGCAAGGTACGCTGGCCTCTTAATTACTTAATTACACCACAGGCATAGCGTTCACCGCCACCGCCCAGCGGTTTAGG > NC_000913_3_pae_pgi/1723896‑1724187 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |