| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | = 3628298 | 14 (0.860) | 6 (0.390) | 6/240 | 1.1 | 30.5% | coding (1241/2736 nt) | rbbA | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein |
| ? | NC_000913_3_pae_pgi | = 3628309 | 14 (0.910) | coding (1230/2736 nt) | rbbA | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein | |||||
ACCATCAACTGCCAGAACATATCCCTCGCCACCGGATCGACACCAGAAGTAGGCTCATCGAGGATTAACATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGAGCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCGGGAATTTCCGCTTCCGGGATGTGAAACAAACGGGCATGTAACTCAAGGTTTTGCCGCACGGTGAGTTCGTTATA > NC_000913_3_pae_pgi/3628187‑3628458 | aCCATCAACTGCCAGAACATATCCCTCGCCACCGGATCGACACCAGAAGTAGGCTCATCGAGGATTAACATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGagcgg > 1:93722‑M2/1‑123 (MQ=255)aCCATCAACTGCCAGAACATATCCCTCGCCACCGGATCGACACCAGAAGTAGGCTCATCGAGGATTAACATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGagcgg < 2:93722‑M2/128‑6 (MQ=255) tCAACTGCCAGAACATATCCCTCGCCACCGGATCGACACCAGAAGTAGGCTCATCGAGGATTAACATCTCCGGGCGATGAATCACCGCCACTGCCAGCGAAAGCCGCTGGCGAATGCCGAGCGGCAATGACTCCGGCAGAATATCTTCaa > 1:127589/1‑150 (MQ=255) gCCACCGGATCGACACCAGAAGTAGGCTCATCGAGGATTAACATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGAGCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAAcgctcg < 1:134299/150‑1 (MQ=255) acacCAGAAGTAGGCTCATCGAGGATTAACATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGAGCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGcc > 2:46261/1‑150 (MQ=255) cGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGAGCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCGGGAATTTCCGCTTCCGGGATGTGaaa > 1:70733/1‑150 (MQ=255) tGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGAGCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCGGGAATTTCCGCTTCCGGGATGTGAAACAAACgg < 3:53519/150‑1 (MQ=255) tGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATACCGAGCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCGGGAATTTCCGCTCCCGGGATGTGAAACAACCgg > 1:171802/1‑150 (MQ=255) aTCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGAGCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTg > 4:81399/1‑78 (MQ=255) aTCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGAGCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTg < 3:81399/78‑1 (MQ=255) tCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGagcggctttcgctggcggtggcggtgattcatcgcccggagatgttaatcctcgatgagcctacttctggt > 1:111538‑M2/1‑38 (MQ=255) tCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGagcggctttcgctggcggtggcggtgattcatcgcccggagatgttaatcctcgatgagcctacttctggt < 2:111538‑M2/109‑72 (MQ=255) accgccaccgccAGCGAAAGCCGCTGGCGAATGCCGagcggctttcgctggcggtggcggtgattcatcgcccggagatgttaatcctcgatgagcctacttctggtgtcgatccggtggcgagggatatgttctggcagttgatggtcg < 1:112291‑M2/150‑115 (MQ=255) ccaccgccaGCGAAAGCCGCTGGCGAATGCCGagcggctttcgctggcggtggcggtgattcatcgcccggagatgttaatcctcgatgagcctacttctggtgtcgatccggtggcgagggatatgttctggcagttgatggtcgatct > 2:112291‑M2/1‑32 (MQ=255) ccaccgccaGCGAAAGCCGCTGGCGAATGCCGAGCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCGGGAATTTCCGCTTCCGGGATGTGAAACAAACggg > 3:91894/1‑141 (MQ=255) ccaccgccaGCGAAAGCCGCTGGCGAATGCCGAGCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCGGGAATTTCCGCTTCCGGGATGTGAAACAAACggg < 4:91894/141‑1 (MQ=255) cGAAAGCCGCTGGCGAACGCCGAGCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCGGGAATTTCCGCTTCCggg > 2:82139/1‑115 (MQ=255) cGAAAGCCGCTGGCGAACGCCGAGCGGCAATGACTCCGGCAGAATATCTTCAACGGCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCGGGAATTTCCGCTTCCggg < 1:82139/115‑1 (MQ=255) aaaGCCGCTGGCGAATGCCGagcggctttcgctggcggtggcggtgattcatcgcccggagatgttaatcctcgatgagcctacttctggtgtcgatccggtggcgagggatatgttctggcagttgatggtcgatctctcgcgccagga < 1:83779‑M2/150‑131 (MQ=255) gCCGCTGGCGAATGCCGagcggctttcgctggcggtggcggtgattcatcgcccggagatgttaatcctcgatgagcctacttctggtgtcgatccggtggcgagggatatgttctggcagttgatggtcgatctctcgcgccaggacaa < 3:111098‑M2/150‑134 (MQ=255) tGGCGAATGCCGAGCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCGGGAATTTCCGCTTCCGGGATGTGAAACAAACGGGCATGTAACTCAAGGTTTTGCCGCACGGTg < 2:70733/150‑1 (MQ=255) gAGCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCGGGAATTTCCGCTTCCGGGATGTGAAACAAACGGGCATGTAACTCAAGGTTTTGCCGCACGGTGAGTTCGTtata > 3:122196/1‑150 (MQ=255) | ACCATCAACTGCCAGAACATATCCCTCGCCACCGGATCGACACCAGAAGTAGGCTCATCGAGGATTAACATCTCCGGGCGATGAATCACCGCCACCGCCAGCGAAAGCCGCTGGCGAATGCCGAGCGGCAATGACTCCGGCAGAATATCTTCAACGTCGTTGAGCTTAAAACGCTCGCTCATTTCAGCCACTCTTGCGGGAATTTCCGCTTCCGGGATGTGAAACAAACGGGCATGTAACTCAAGGTTTTGCCGCACGGTGAGTTCGTTATA > NC_000913_3_pae_pgi/3628187‑3628458 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |