| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | = 4192177 | 6 (0.370) | 4 (0.260) | 4/242 | 1.6 | 35.1% | coding (459/771 nt) | thiG | thiamine biosynthesis ThiGH complex subunit |
| ? | NC_000913_3_pae_pgi | = 4192203 | 9 (0.580) | coding (433/771 nt) | thiG | thiamine biosynthesis ThiGH complex subunit | |||||
AGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGGCCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTCCAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTTCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAG > NC_000913_3_pae_pgi/4192055‑4192337 | aGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGGCCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTCCAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAg < 1:83849‑M2/150‑2 (MQ=255) gCCGATGCCAGCATCGACAACCACCGGCACTGTGGCCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTCCAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACaa > 2:6009/1‑150 (MQ=255) tgtgGCCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTCCAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCAc > 2:147316/1‑150 (MQ=255) gATAATAAACGCCAGCATGGCGCGCGTTTCCAGACTCTGATTCGAGCCAAACGGCGCGCCGAGCGGCATAACCGCTGCCCAGCCGACCTCATCCAGACGATTCCCCAATACCGGAACGACCCCACAGCAAGACAGCACGACAAATccccg > 2:138399/1‑148 (MQ=255) aTGGCGCGGGTTTCCAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTcg > 4:108002/1‑150 (MQ=255) cTGATTCGACCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTTCAGGGTTTCGAt > 1:137038/1‑150 (MQ=255) gAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAgccgattggctcgaatcagggactggaaacccgcgccatgctggagattattatccagcaggccacagtgccggtggttgtcgatgctggc < 1:169889‑M2/129‑92 (MQ=255) gAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAgccgattggctcgaatcagggactggaaacccgcgccatgctggagattattatccagcaggccacagtgccggtggttgtcgatgctggc > 2:169889‑M2/1‑38 (MQ=255) cGGCGCGCCGAGCGGCATCACCGCTGCACAgccgattggctcgaatcagggactggaaacccgcgccatgctggagattattatccagcaggccacagtgccggtggttgtc < 3:60315‑M2/112‑83 (MQ=255) cGGCGCGCCGAGCGGCATCACCGCTGCACAgccgattggctcgaatcagggactggaaacccgcgccatgctggagattattatccagcaggccacagtgccggtggttgtc > 4:60315‑M2/1‑30 (MQ=255) gcgcgcCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTTCAGGGTTTCGATGGGATCGGGCAAcagcc < 1:147316/150‑1 (MQ=255) gCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTTCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAg > 4:2397/1‑150 (MQ=255) tCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTTCa > 1:128262/1‑108 (MQ=255) tCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTTCa < 2:128262/108‑1 (MQ=255) | AGCGCCTGCGCGGCATGGCTGGGAACGCCGATGCCAGCATCGACAACCACCGGCACTGTGGCCTGCTGGATAATAATCTCCAGCATGGCGCGGGTTTCCAGTCCCTGATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTTCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAG > NC_000913_3_pae_pgi/4192055‑4192337 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |