New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 1822923	13 (0.800)	3 (0.190)	3/242	1.9	21.1%	coding (466/828 nt)	nadE	NAD synthetase, NH3/glutamine‑dependent
	?	NC_000913_3_pae_pgi	= 1822933	10 (0.640)					coding (476/828 nt)	nadE	NAD synthetase, NH3/glutamine‑dependent

TATTGGCCAGCGAACAGGCATTGCGGGAAGCAGGCATTGAACTGAGCGATTTTGTCCGTGGCAATGAAAAAGCGCGTGAGCGGATGAAAGCACAATATAGCATTGCGGGTATGACCAGCGGTGTCGTGGTGGGCACCGATCATGCAGCAGAAGCCATTACCGGATTCTTCACTAAATATGGTGACGGCGGTACGGACATTAATCCGCTGTATCGTCTCAACAAACGTCAGGGTAAACAGTTACTGGCGGCAT  >  NC_000913_3_pae_pgi/1822801‑1823052                                                                                                                                     |                                                                                                                        tATTGGCCAGCGAACAGGCATTGCGGGAAGCAGGCATTGAACTGAGCGATTTTGTCCGTGGCAATGAAAAAGCGCGTGAGCGGATGAAAGCACAATATAGCATTGCGGGTATGACCAGCGGTGTCGTGGTggg                                                                                                                         >  1:140000/1‑133 (MQ=255) tATTGGCCAGCGAACAGGCATTGCGGGAAGCAGGCATTGAACTGAGCGATTTTGTCCGTGGCAATGAAAAAGCGCGTGAGCGGATGAAAGCACAATATAGCATTGCGGGTATGACCAGCGGTGTCGTGGTggg                                                                                                                         <  2:140000/133‑1 (MQ=255)                aGGCATTGCGGGAAGCAGGCATTGAACTTAGCGATTTTGTCCGTGGCAATGAAAAAGCGCGTGAGCGGATGAAAGCACAATATAGCATTGCGGGTATGACCAGCGGTGTCGTGGTGGGCACCGATCATGCAGCAGAAGCCATTACCGGAt                                                                                         <  3:89187/150‑1 (MQ=255)                                       gAACTGAGCGATTTTGTCCGTGGCAATGAAAAAGCGCGTGAGCGGATGAAAGCTCAATATAGCATTGCGGGTATGACCAGCGGTGTCGTGGTGGGCACCGATGATGCAGCAGAAGCCATTACCGGATTCTTGACTAAATATGGTGAcggc                                                                  <  2:125444/150‑1 (MQ=255)                                           tGAGCGATTTTGTCCGTGGCAATGAAAAAGCGCGTGAGCGGATGAAAGCACAATATAGCATTGCGGGTATGACCAGCGGTGTCGTGGTGGGCACCGATCATGCAGCAGAAGCCATTACCGGATTCTTCACTAAATATGGTGACGGCGGTa                                                              >  1:77707/1‑150 (MQ=255)                                              gCGATTTTGTCCGTGGCAATGAAAAAGCGCGTGAGCGGATGAAAGCACAATATAGCATTGCGGGTATGACCAGCGGTGTCGTGGTGGGCACCGATCATGCAGCAGAAGCCATTACCGGATTCTTCACTAAATATGGTGACGGCGGTACgg                                                           <  2:77707/150‑1 (MQ=255)                                                         cGTGGCAATGAAAAAGCGCGTGAGCGGATGAAAGCACAATATAGCATTGCGGGTATGACCAGCGGTGTCGTGGTGGGCACCGATCATGCAGCAGAAGCCATTACCGGATTCTTCACTAAATATGGTGACGGCGGTACGGACATTAATCCg                                                <  3:96983/150‑1 (MQ=255)                                                                     aaaGCGCGTGAGCGGATGAAAGCACAATATAGCATTGCGGGTATGACCAGCGGTGTCGTGGTGGGCACCGATCATGCAGCAGAAGCCATTACCGGATTCTTCACTAAATATGGTGACGGCGGTACGGACATTAATCCGCTGTATCGtctc                                    >  3:31830/1‑150 (MQ=255)                                                                                gCGGATGAAAGCACAATATAGCATTGCGGGTATGACCAGCGGTGTCGTGGTGGGCACCGATCATgcag                                                                                                           <  3:26570/68‑1 (MQ=255)                                                                                gCGGATGAAAGCACAATATAGCATTGCGGGTATGACCAGCGGTGTCGTGGTGGGCACCGATCATgcag                                                                                                           >  4:26570/1‑68 (MQ=255)                                                                                              aaTATAGCATTGCGGGTATGACCAGCGGTGTCGTGGTGGGcaccgctggtcatacccgcaatgctatattgtgctttcatccgctcacgcgctttttcattgccacggacaaaatcgctcagttcaatgcctgcttcccgcaatgcctgt           <  4:81554‑M2/150‑111 (MQ=255)                                                                                                                 gACCAGCGGTGTCGTGGTGGGCACCGATCATGCAGCAGAAGCCATTACCGGATTCTTCACTAAATATGGTGACGGCGGTACGGACATTAATCCGCTGTATCGTCTCAACAAACGTCAGGGTAAACAGTTACTGGCGGCAt  >  3:49124/1‑140 (MQ=255)                                                                                                                 gACCAGCGGTGTCGTGGTGGGCACCGATCATGCAGCAGAAGCCATTACCGGATTCTTCACTAAATATGGTGACGGCGGTACGGACATTAATCCGCTGTATCGTCTCAACAAACGTCAGGGTAAACAGTTACTGGCGGCAt  <  4:49124/140‑1 (MQ=255)                                                                                                                       cGGTGTCGTGGTGGGcaccgctggtcatacccgcaatgctgtattgtgctttcatccgc                                                                             >  2:125454‑M2/1‑15 (MQ=255)                                                                                                                       cGGTGTCGTGGTGGGcaccgctggtcatacccgcaatgctatattgtgctttcatccgc                                                                             <  1:125454‑M2/59‑45 (MQ=255)                                                                                                                                     |                                                                                                                        TATTGGCCAGCGAACAGGCATTGCGGGAAGCAGGCATTGAACTGAGCGATTTTGTCCGTGGCAATGAAAAAGCGCGTGAGCGGATGAAAGCACAATATAGCATTGCGGGTATGACCAGCGGTGTCGTGGTGGGCACCGATCATGCAGCAGAAGCCATTACCGGATTCTTCACTAAATATGGTGACGGCGGTACGGACATTAATCCGCTGTATCGTCTCAACAAACGTCAGGGTAAACAGTTACTGGCGGCAT  >  NC_000913_3_pae_pgi/1822801‑1823052

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.