New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 3123458	19 (1.170)	5 (0.330)	5/238	1.3	22.2%	coding (348/2172 nt)	glcB	malate synthase G
	?	NC_000913_3_pae_pgi	= 3123472	17 (1.110)					coding (334/2172 nt)	glcB	malate synthase G

GCCGCTGACCATCGCCCCTTCCTGCGGGATGATGTCGCTGCCGTATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCAGCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCA  >  NC_000913_3_pae_pgi/3123335‑3123611                                                                                                                                          |                                                                                                                                            gCCGCTGACCATCGCCCCTTCCTGCGGGATACTGTCGCATCCGTTGAACGCATTTTACAGAGACCCCCAGCGAGAGATCGCCGCGTTCAGCGCGTAGAGGGCGATCATTGCCGGAACCACCAGCTGCGGACCCGCCTGACTAGTAATTTc                                                                                                                                 >  2:110459/1‑150 (MQ=255)    gCTGACCATCGCCCCTTCCTGCGGGATGATGTCGCTGCCGTATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCAGCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCt                                                                                                                              <  1:200556/150‑1 (MQ=255)        aCCATCGCCCCTTCCTGCGGGATGATGTCGCTGCCGTATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCAGCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCa                                                                                                                          >  3:60618/1‑150 (MQ=255)                                            tataACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCAGCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGc                                                                                      >  3:19692/1‑150 (MQ=255)                                                             tGAGCCCCAGCGAGCGTTCGCCGCGTTCAGCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAg                                                                     >  1:18432/1‑150 (MQ=255)                                                                        gagcgTTCGCCGCGTTCAGCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGcc                                                                                                                     >  1:20416/1‑91 (MQ=255)                                                                        gagcgTTCGCCGCGTTCAGCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGcc                                                                                                                     <  2:20416/91‑1 (MQ=255)                                                                               cgccgcGTTCAGCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGAttt                                                   <  4:60618/150‑1 (MQ=255)                                                                                 ccgcGTTCAGCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACgcgc                                                                                               >  1:32831/1‑104 (MQ=255)                                                                                 ccgcGTTCAGCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACgcgc                                                                                               <  2:32831/104‑1 (MQ=255)                                                                                  cgcgTTCAGCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTtata                                                <  3:67135/150‑1 (MQ=255)                                                                                         aGCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGgctggtggttccggcaatgaacgcccgctacgcgctgaacgcggcgaacgctcgctgg                                                                                   >  4:53707‑M2/1‑50 (MQ=255)                                                                                         aGCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGgctggtggttccggcaatgaacgcccgctacgcgctgaacgcggcgaacgctcgctgg                                                                                   <  3:53707‑M2/108‑59 (MQ=255)                                                                                         aGCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCt                                         <  4:19692/150‑1 (MQ=255)                                                                                            gcgTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGgctggtggttccggcaatgaacgcccgctacgcgctgaacgcggcgaacgctcgctggg                                                                                  <  4:61154‑M2/106‑60 (MQ=255)                                                                                            gcgTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGgctggtggttccggcaatgaacgcccgctacgcgctgaacgcggcgaacgctcgctggg                                                                                  >  3:61154‑M2/1‑47 (MQ=255)                                                                                                           aTTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTAt                                     >  2:17050/1‑136 (MQ=255)                                                                                                           aTTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTAt                                     <  1:17050/136‑1 (MQ=255)                                                                                                                       accaGCTGCGGCCCCGCCTGgctggtggttccggcaatgaacgcccgctacgcgctgaacgcggcgaacgctcgctggggctcactgtacgatgcgttatacggcagcgacatcatcccgcaggaaggggcgatggtcagcggctacgat           <  1:168561‑M2/150‑131 (MQ=255)                                                                                                                            cTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCa      <  2:18432/150‑1 (MQ=255)                                                                                                                            cTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCa      >  1:61411/1‑150 (MQ=255)                                                                                                                                ggCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACtca  >  3:68694/1‑150 (MQ=255)                                                                                                                                          |                                                                                                                                            GCCGCTGACCATCGCCCCTTCCTGCGGGATGATGTCGCTGCCGTATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCAGCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCA  >  NC_000913_3_pae_pgi/3123335‑3123611

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.