New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_pgi = 3621525NA (NA)3 (0.190) 3/244 1.9 100% coding (2334/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913_3_pae_pgi = 3621561 0 (0.000)coding (2370/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

GCGCAGGGGCTGGCGAACCGCTGTATACCGGACAGCCTGCCCGCCGTGGAATGGCTGACCTACGGCAGCGGTTACCTGGCAGGCATGAAACTCGGCGACACACCGCTGGTGGAGTACACCCGCGACCGCCTGCACCGGGAAACGCTGCGC  >  NC_000913_3_pae_pgi/3621520‑3621669
                                         |                                                                                                            
gcgcAGGGGCTGGCGAACCGCTGTATACCGGACAGCCTGCCCctgcgcgttgtacgcatgtctggtctcatgctgccagagcagtgcttccgtctgcgggtgatgcaccgtctgacgctcaccggtcagccggcctttctcatcatacct  <  3:52860‑M2/150‑109 (MQ=255)
 cgcAGGGGCTGGCGAACCGCTGTATACCGGACAGCCTGCCCctgcgcgttgtacgcatgtctggtctcatgctgccagagcagtgcttccgtctgcgggtgatgcaccgtctgacgctcaccggtcagccggcct                <  3:61316‑M2/135‑95 (MQ=255)
 cgcAGGGGCTGGCGAACCGCTGTATACCGGACAGCCTGCCCctgcgcgttgtacgcatgtctggtctcatgctgccagagcagtgcttccgtctgcgggtgatgcaccgtctgacgctcaccggtcagccggcct                >  4:61316‑M2/1‑41 (MQ=255)
                                         |                                                                                                            
GCGCAGGGGCTGGCGAACCGCTGTATACCGGACAGCCTGCCCGCCGTGGAATGGCTGACCTACGGCAGCGGTTACCTGGCAGGCATGAAACTCGGCGACACACCGCTGGTGGAGTACACCCGCGACCGCCTGCACCGGGAAACGCTGCGC  >  NC_000913_3_pae_pgi/3621520‑3621669

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.