mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_pgi | 4,295,320 | 0 | C | T | 24.5% | 454.0 / 132.2 | 245 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_pae_pgi | 526,792 | 0 | A | C | 21.6% | 365.2 / 101.3 | 183 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 526,796 | 0 | C | G | 20.8% | 444.8 / 112.3 | 178 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 526,800 | 0 | A | G | 20.1% | 380.4 / 77.5 | 170 | E1180E (GAA→GAG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| Marginal new junction evidence (lowest skew 10 of 636 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | = 1207805 | 103 (0.570) | 79 (0.490) | 62/244 | 4.1 | 49.1% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_pae_pgi | = 1209602 | 73 (0.460) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_pae_pgi | 1207790 = | 107 (0.590) | 69 (0.430) | 58/244 | 4.8 | 44.6% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_pae_pgi | 1209619 = | 77 (0.480) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_pae_pgi | = 1097475 | NA (NA) | 61 (0.550) +53 bp |
20/170 | 10.6 | 33.2% | intergenic (+646/+90) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_pae_pgi | = 1097583 | 200 (1.100) | noncoding (70/88 nt) | serX | tRNA‑Ser | |||||
| * | ? | NC_000913_3_pae_pgi | = 1097294 | 42 (0.230) | 61 (0.550) +53 bp |
20/170 | 10.6 | 45.1% | intergenic (+465/+271) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_pae_pgi | = 1097583 | 200 (1.100) | noncoding (70/88 nt) | serX | tRNA‑Ser | |||||
| * | ? | NC_000913_3_pae_pgi | = 4541950 | 150 (0.830) | 33 (0.190) | 26/258 | 14.5 | 16.8% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_pgi | = 4542246 | 186 (1.100) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_pgi | 2900306 = | 183 (1.010) | 22 (0.140) | 20/244 | 16.2 | 11.5% | intergenic (‑33/‑286) | ygcW/yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein |
| ? | NC_000913_3_pae_pgi | 2900346 = | 176 (1.100) | intergenic (‑73/‑246) | ygcW/yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein | |||||
| * | ? | NC_000913_3_pae_pgi | 4541942 = | 155 (0.850) | 25 (0.150) | 21/258 | 16.7 | 13.0% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_pgi | 4542256 = | 189 (1.110) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_pgi | 985841 = | 176 (0.970) | 23 (0.140) | 20/252 | 16.8 | 12.4% | intergenic (‑132/+53) | aspC/ompF | aspartate aminotransferase, PLP‑dependent/outer membrane porin 1a (Ia;b;F) |
| ? | NC_000913_3_pae_pgi | 985869 = | 164 (0.990) | intergenic (‑160/+25) | aspC/ompF | aspartate aminotransferase, PLP‑dependent/outer membrane porin 1a (Ia;b;F) | |||||
| * | ? | NC_000913_3_pae_pgi | = 4171607 | 103 (0.570) | 29 (0.170) | 21/264 | 17.1 | 22.8% | intergenic (+63/‑30) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon |
| ? | NC_000913_3_pae_pgi | = 4213022 | NA (NA) | intergenic (+76/‑18) | rrlE/rrfE | 23S ribosomal RNA of rrnE operon/5S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913_3_pae_pgi | = 3852844 | 178 (0.980) | 25 (0.150) | 19/254 | 17.4 | 13.2% | intergenic (‑60/+46) | ilvB/ivbL | acetolactate synthase 2 large subunit/ilvB operon leader peptide |
| ? | NC_000913_3_pae_pgi | = 3852855 | 165 (0.990) | intergenic (‑71/+35) | ilvB/ivbL | acetolactate synthase 2 large subunit/ilvB operon leader peptide | |||||