| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913_3_pae_pgi | 1,712,449 | A→G | intergenic (+291/‑320) | nth → / → dtpA | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_pgi | 1,712,449 | 0 | A | G | 98.3% | 192.2 / NA | 58 | intergenic (+291/‑320) | nth/dtpA | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (28/29); minor base C (0/1); total (28/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGAATCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGA > NC_000913_3_pae_pgi/1712307‑1712587 | aaTAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGAATCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACt < 2:715643/149‑1 (MQ=255)aaTAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGAATCAGGTTAAAATCATTTAAAGTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACt < 1:444746/149‑1 (MQ=255) aTAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGAATCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTg < 1:474548/149‑1 (MQ=255) aGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGAATCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGa < 1:1078107/149‑1 (MQ=255) aGCAAAATATTCTATTCATGCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCATGAATCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGa < 1:1167801/149‑1 (MQ=255) gAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGAATCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTa > 1:619478/1‑149 (MQ=255) ttttCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGAATCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTAtctc > 1:526216/1‑149 (MQ=255) cTATTCATTCGTGATCAAGATCACGATGCCTTCGCAATGTAAAAACATTGCAAGAATCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTa < 1:361688/149‑1 (MQ=255) ttcattcGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAGGAATCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTa > 1:926138/1‑149 (MQ=255) ttcGTTATCAAGATCACGATGCTGTAGCAATGTAAAAACATTGCAAGAATCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTaaaaa < 1:1190772/149‑1 (MQ=255) ttcGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGAATCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTaaaaa < 2:134367/149‑1 (MQ=255) gTGATCAAGCTCACGATCCTGTCGCAATGTAAAATCATTGCAAGAATCAGGTTAACATCATTTGAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGc < 1:1171730/149‑1 (MQ=255) gTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGAATCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTaaaaa > 1:327508/1‑146 (MQ=255) gTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGAATCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTaaaaa < 2:327508/146‑1 (MQ=255) gTGATCAAGAACACTATGCTGTAGCAATGTAAAAACATTGCAAGAATCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGc < 2:926138/149‑1 (MQ=255) tGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGAATCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCt < 1:119062/149‑1 (MQ=255) gATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGAATCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTa > 1:612107/1‑149 (MQ=255) tCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGAATCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTaaa < 2:370165/149‑1 (MQ=255) aTCAGGATGCTGTCGCAAGGCAAAAACATTGCAAGAATCAGGTTCAGGTGAGTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTATACTCGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCa < 1:506974/149‑1 (MQ=255) gATGCTGTCGCAATGTAAAAACATTGCAAGAATCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACa > 2:1220891/1‑149 (MQ=255) gATGCTGTCGCAATGTAAAAACATTGCAAGAATCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACa > 1:814220/1‑149 (MQ=255) gCAATGTAAAAACATTGCAAGAATCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGt > 1:871665/1‑149 (MQ=255) aTGTAAAAACATTGCAAGAAGCATGCTAACATCATTTAAATTTACACTCGCAACAAATATTGACCTACAAAACAGTACACTGGCGATTTTTCGGAAACTGGACTAGCTGACTAGTAAAAACGCTAAATAGCAGAACATATCGCCgaact < 2:162519/149‑5 (MQ=255) tAAAAACATTGCAAGAATCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACACTAAATAGCAGAACCTATCGCCGTTAAGcc > 2:636011/1‑149 (MQ=255) aaaaCATTGCAAGAATCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAt < 1:1220891/149‑1 (MQ=255) aaaaCAATGCAAGAATCAGGTTAAAATCAATTACATTCAACCAACAAACCCACCCAAGCGAAAAAAACATCACACCACCTATTTTCCCTTAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAt < 2:937999/149‑1 (MQ=255) aCATTGCAAGAATCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCAc < 2:612107/149‑1 (MQ=255) cATTGCAAGAATCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCAcc < 1:400693/149‑1 (MQ=255) aaGAATCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCCTCAcccccccc > 2:830173/1‑147 (MQ=255) aaGAATCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAAAGCTAAATAGCAGAACATATGCCAGTTATCCCATCACCCCCctc > 2:700023/1‑149 (MQ=255) aGAATCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGGACATATTGCCGTTAAGCCATCATCCCCcttt > 1:763683/1‑147 (MQ=255) aaTCAGTTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTAGTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTca < 2:1095043/149‑1 (MQ=255) aaTCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTca < 2:619478/149‑1 (MQ=255) gTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTcagtgcag < 1:845779/149‑1 (MQ=255) gTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTcagtgcag < 2:1069190/149‑1 (MQ=255) ttAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTcagtgcagt < 2:1181330/149‑1 (MQ=255) aaaaTCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATAACCCCCCTCTCAGTGCAGTGa > 2:683993/1‑149 (MQ=255) tttAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTCAGTGAAGTGAAAAAATc > 2:163660/1‑149 (MQ=255) aaTTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAGATAGCAGAACATATCACCCTTAAGCCATCACCCCCCACTCAGTGCAGTGAACAAATATGcc > 2:221580/1‑149 (MQ=255) aaTTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTCAGTGCAGTGAAAAAATCTGcc < 2:599187/149‑1 (MQ=255) tttACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCAccccc < 2:1217219/121‑1 (MQ=255) tttACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCAccccc > 1:1217219/1‑121 (MQ=255) ttACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATAGCCGTTAAGCCATCACCCCCCTACCAGTGCACTGAAACAATCTAccctc > 2:1174468/1‑146 (MQ=255) gacccaacaaAAATTGACCTACAAAACATTACAATGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACACGCATCGCAGTGTAGTGAAAAAATCTGCCGTTACGtt < 2:285358/145‑1 (MQ=255) cGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTCAGTGCAGTGAAAAAAGCTGCCGTTACGtgtt > 1:274233/1‑149 (MQ=255) gCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATATCGCCAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGttttt > 1:309509/1‑149 (MQ=255) aacaaATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTg > 2:396811/1‑149 (MQ=255) acaaATATTGACCTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGa > 2:1174381/1‑149 (MQ=255) cTACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGc > 2:1192822/1‑149 (MQ=255) tACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCt > 1:626650/1‑149 (MQ=255) tACAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCt < 1:1267894/149‑1 (MQ=255) cAAAACATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTgg > 2:36142/1‑149 (MQ=255) aaaCATTACACTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAGCATATCGCCGTTAAGCCATCACCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGCAAAATTTAACGCTGGAt > 1:702632/1‑149 (MQ=255) cacTGGCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTc > 1:46688/1‑149 (MQ=255) ggCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGCACTGGTCTCCTGTAAGCCATCACCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCgg < 1:636011/149‑1 (MQ=255) ggCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAAc < 2:591259/140‑1 (MQ=255) ggCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAAc > 1:591259/1‑140 (MQ=255) gCTATTTTTCGGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGa > 1:734163/1‑149 (MQ=255) | AATAGCGAAATTTTCTATTCATTCGTGATCAAGATCACGATGCTGTCGCAATGTAAAAACATTGCAAGAATCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGA > NC_000913_3_pae_pgi/1712307‑1712587 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |