New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	1552101 =	NA (NA)	28 (0.160)	25/234	15.5	NA	noncoding (31/97 nt)	RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913_3_pae_pgi	1552249 =	NA (NA)					noncoding (1/97 nt)	RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.

CGGCATGAACAAAGCCTACGTTGTCTACAATATGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_pgi/1552252‑1552101 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcatGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATT  >  NC_000913_3_pae_pgi/1552249‑1552402                                                                                                                                                                                                                                                                                                                      CGGCATGAACAAAGCCTACGTTGTCTACAATATGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTC                                                                                                                                                              <  2:981405/150‑1  GGCATGAACAAAGCCTACGTTGTCTACAATATGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATGAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCA                                                                                                                                                             >  1:1337167/1‑150  GGCATGAACAAAGCCTACGTTGTCTACAATATGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCA                                                                                                                                                             >  4:928820/1‑150    CATGAACAAAGCCTACGTTGTCTACAATATGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATG                                                                                                                                                           <  1:1217149/150‑1     ATGAACAAAGCCTACGTTGTCTACAATATGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGC                                                                                                                                                          <  3:407942/150‑1      TGAACAAAGCCTACGTTGTCTACAATATGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCC                                                                                                                                                         >  2:743548/1‑150       GAACAAAGCCTACGTTGTCTACAATATGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCC                                                                                                                                                         <  2:1366409/149‑1       GAACAAAGCCTACGTTGTCTACAATATGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCC                                                                                                                                                         >  2:431834/1‑149       GAACAAAGCCTACGTTGTCTACAATATGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCC                                                                                                                                                         <  1:431834/149‑1       GAACAAAGCCTACGTTGTCTACAATATGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCC                                                                                                                                                         >  1:1366409/1‑149        AACAAAGCCTACGTTGTCTACAATATGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGG                                                                                                                                                       <  1:743548/150‑1          CAAAGCCTACGTTGTCTACAATATGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGAT                                                                                                                                                     <  2:1330431/150‑1          CAAAGCCTACGTTGTCTACAATATGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGAT                                                                                                                                                     <  2:1425091/150‑1          CAAAGCCTACGTTGTCTACAATATGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGAT                                                                                                                                                     >  2:1723530/1‑150           AAAGCCTACGTTGTCTACAATATGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATG                                                                                                                                                    >  1:1139619/1‑150            AAGCCTACGTTGTCTACAATATGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGC                                                                                                                                                   <  2:1155846/150‑1             AGCCTACGTTGTCTACAATATGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTGTTGGATTTGAAGGGTT‑‑TTC                                                                                                                                                              <  2:694853/138‑1             AGCCTACGTTGTCTACAATATGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTGTTGGATTTGAAGGGTT‑‑TTC                                                                                                                                                              >  1:694853/1‑138                CTACGTTGTCTACAATATGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGGTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCG                                                                                                                                                        >  2:1694247/1‑141                CTACGTTGTCTACAATATGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCG                                                                                                                                                        <  1:1694247/141‑1                        TCTACAATATGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCC                                                                                                                                       <  3:86541/150‑1                              ATATGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑T                                                                                                                                                                <  2:1209475/119‑1                              ATATGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑T                                                                                                                                                                >  1:1209475/1‑119                                 TGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGC                                                                                                                              <  2:1365292/150‑1                                      ATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAA                                                                                                                         <  2:1139619/150‑1                                       TGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGA                                                                                                                          >  1:366748/1‑150                                           GCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC                                                                                                                    <  2:359855/150‑1                                                                 ACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCA                                                                                                <  2:366748/150‑1                                                                   TGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTC                                                                                                                                                              >  4:103506/1‑84                                                                   TGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTC                                                                                                                                                              <  3:103506/84‑1                                                                     ATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGT                                                                                              <  1:1313018/146‑1                                                                     ATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGT                                                                                              >  2:1313018/1‑146                                                                      TGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACG                                                                                         <  1:1605890/150‑1                                                                         CAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTG‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCAT                                                                                                                            >  1:44269/1‑112                                                                         CAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTG‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCAT                                                                                                                            <  2:44269/112‑1                                                                          AAACGCAACATTGCCTGATGCGGTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTAT                                                                                                                                   <  4:1268283/104‑1                                                                          AAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTAT                                                                                                                                   >  3:1268283/1‑104                                                                          AAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTG‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGC                                                                                                                              >  1:183979/1‑109                                                                          AAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATATATTGGATTTGAAGGGTG‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGC                                                                                                                              <  2:183979/109‑1                                                                           AACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGAT                                                                                                                                                     >  2:2233369/1‑85                                                                           AACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGAT                                                                                                                                                     <  1:2233369/85‑1                                                                            ACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAA                                                                                                                       <  4:1211947/114‑1                                                                            ACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAA                                                                                                                       >  3:1211947/1‑114                                                                             CGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCC                                                                                                                                                         >  2:1176824/1‑79                                                                             CGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCC                                                                                                                                                         <  1:1176824/79‑1                                                                                AACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCC                                                                                                                                                         >  2:274231/1‑76                                                                                AACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCC                                                                                                                                                         <  1:274231/76‑1                                                                                 ACATTGCCTGATTCGCGACGCGTATCATGTCTACACGTTCACTGCAATCTTTTTGAGGTGAATGGTG‑‑TTCATGCCGGAGGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGA                                                                              <  3:811768/150‑1                                                                                                    GCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTC                                                                                                                                                              <  2:1643501/51‑1                                                                                                    GCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTC                                                                                                                                                              >  1:1643501/1‑51                                                                                                      TTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCA                                                                                                                             <  2:1132759/82‑1                                                                                                      TTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCA                                                                                                                             >  1:1132759/1‑82                                                                                                           AGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTG‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTG                                                    >  1:1710881/1‑150                                                                                                               CTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATC                                                                                                                                  <  2:1833457/68‑1                                                                                                               CTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATC                                                                                                                                  >  1:1833457/1‑68                                                                                                                       TCACTGCAATCTATTGGATTTGAAGGGTG‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGC                                                                                                                              >  3:1402704/1‑64                                                                                                                       TCACTGCAATCTATTGGATTTGAAGGGTG‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGC                                                                                                                              <  4:1402704/64‑1                                                                                                                                        ATTTGAAGGGTT‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTT                       >  2:2059064/1‑150                                                                                                                                                      TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAATCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGT                                             >  2:1016985/1‑116                                                                                                                                                      TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAATCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGT                                             <  1:1016985/116‑1                                                                                                                                                      TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCAT           >  1:780038/1‑150                                                                                                                                                      TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCACTTTATAAAGCGCCAT           <  2:1198832/150‑1                                                                                                                                                      TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGT                                                                                      >  2:45281/1‑75                                                                                                                                                      TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGT                                                                                      <  1:45281/75‑1                                                                                                                                                      TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATC                                                                                                            >  1:1080234/1‑53                                                                                                                                                      TTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATC                                                                                                            <  2:1080234/53‑1                                                                                                                                                       TCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATT          >  2:982129/1‑150                                                                                                                                                        CATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTT         >  1:4479/1‑150                                                                                                                                                         ATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGT                                                 >  1:754129/1‑109                                                                                                                                                         ATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGT                                                 <  2:754129/109‑1                                                                                                                                                         ATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGC                                                                    >  1:979387/1‑90                                                                                                                                                         ATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGC                                                                    <  2:979387/90‑1                                                                                                                                                         ATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGT                                                                                      >  2:1668231/1‑72                                                                                                                                                         ATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGT                                                                                      <  1:1668231/72‑1                                                                                                                                                          TGCCGTATTCGGCGTTAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTT       <  4:86541/150‑1                                                                                                                                                          TGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTT       <  3:1371466/150‑1                                                                                                                                                          TGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCACTTTATAAAGCGCCATTTag       <  2:1957173/150‑3                                                                                                                                                          TGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCACTTTATAAAGCGCCATTTag       <  2:1957329/150‑3                                                                                                                                                          TGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGACTGATAAGAGTCGACCACCAGGCAACGTAGAGATTGTCGTCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTT       >  1:350822/1‑150                                                                                                                                                          TGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATA                                                                                                       <  2:1542532/54‑1                                                                                                                                                          TGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATA                                                                                                       >  1:1542532/1‑54                                                                                                                                                           GCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTT      >  2:1677074/1‑150                                                                                                                                                           GCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTT                       <  1:1529076/133‑1                                                                                                                                                           GCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTT                       >  2:1529076/1‑133                                                                                                                                                           GCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTT                        <  4:143847/132‑1                                                                                                                                                           GCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGT                                             <  1:2132683/111‑1                                                                                                                                                           GCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGT                                             >  2:2132683/1‑111                                                                                                                                                           GCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGAGAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTT      <  1:2039948/150‑1                                                                                                                                                            CCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTT     <  1:911603/150‑1                                                                                                                                                            CCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTT     >  4:1453688/1‑150                                                                                                                                                            CCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTT       <  1:2124311/148‑1                                                                                                                                                            CCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTT       >  2:2124311/1‑148                                                                                                                                                            CCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTGCTAAATGGCGCTTTATAAAGTGCCATTTTTTT     >  2:602953/1‑150                                                                                                                                                             CGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTA    <  2:843444/150‑1                                                                                                                                                             CGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTA    >  2:448887/1‑150                                                                                                                                                               GATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATT  <  1:1960564/150‑1                                                                                                                                                                                                                                                                                                                      CGGCATGAACAAAGCCTACGTTGTCTACAATATGAAAATGACGCCTTTTACAGCGCCATTTGAAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTT‑‑TTCATgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_pgi/1552252‑1552101 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcatGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATT  >  NC_000913_3_pae_pgi/1552249‑1552402

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.