| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913_3_pae_pgi | 3,316,755 | G→A | R258C (CGT→TGT) | nusA ← | transcription termination/antitermination L factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_pgi | 3,316,755 | 0 | G | A | 91.5% | 340.3 / 16.6 | 117 | R258C (CGT→TGT) | nusA | transcription termination/antitermination L factor |
| Reads supporting (aligned to +/- strand): ref base G (3/7); new base A (61/46); total (64/53) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.82e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.30e-01 | |||||||||||
Only 100 of 121 total aligned reads displayed.
CATGGTGTGTTTATCTTCATCCACCACGATAGAAGCAACGTCTGCCGGTGCCATTGCGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACGCGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTCAATCACTTCTTCGCCGATTTCTGGCACTTCAATACGGA > NC_000913_3_pae_pgi/3316612‑3316901 | cATGGTGTGTTTATCTTCATCCACCACGATAGAAGCAACGTCTGCCGGTGCCATTGCGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGcc < 1:697172/150‑1 (MQ=255) tgtTTATCTTCATCCACCACGATAGAAGCAACGTCTGCCGGTGCCATTGCGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATa > 1:1106399/1‑150 (MQ=255) tATCTTCATCCACCACGATAGAAGCAACGTCTGCCGGTGCCATTGCGTTAATCACGAACTGCGCTGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTa < 2:584405/150‑1 (MQ=255) cTTCATCCACCACGATAGAAGCAACGTCTGCCGGTGCCATTGCGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACGCGCGCCACGCATACCTACGc < 1:344641/150‑1 (MQ=255) cTTCATCCACCACGATAGAAGCAACGTCTGCCGGTGCCATTGCGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGc > 1:278148/1‑150 (MQ=255) cTTCATCCACCACGATAGAAGCAACGTCTGCCGGTGCCATTGCGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGc > 3:649395/1‑150 (MQ=255) tCATCCACCACGATAGAAGCAACGTCTGCCGGTGCCATTGCGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCaa > 4:172398/1‑150 (MQ=255) aTCCACCACGATAGAAGCAACGTCTGTCGGTGCCATTGCGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGc > 1:1373461/1‑150 (MQ=255) aTCCACCACGATAGAAGCAACGTCTGCCGGTGCCATTGCGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGAATACCTACGCAAGc > 2:67722/1‑150 (MQ=255) ccaccaCGATAGAAGCAACGTCTGCCGGTGCCATTGCGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCAc < 2:899998/150‑1 (MQ=255) ccaccaCGATAGAAGCAACGTCTGCCGGTGCCATTGCGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCAc < 3:390388/150‑1 (MQ=255) ccacGATAGAAGCAACGTCTGCCGGTGCCATTGCGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTa > 1:916817/1‑150 (MQ=255) cacGATAGAAGCAACGTCTGCCGGTGCCATTGCGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTAc < 3:373686/150‑1 (MQ=255) cacGATAGAAGCAACGTCTGCCGGTGCCATTGCGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTAc > 3:129034/1‑150 (MQ=255) cGATAGAAGCAACGTCTGCCGGTGCCATTGCGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCg < 2:1426753/150‑1 (MQ=255) tAGAAGCAACGTCTGCCGGTGCCATTGCGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACGCGCGCCACGCATACCTACGCAAGCACCTACCGGa > 1:77711/1‑149 (MQ=255) tAGAAGCAACGTCTGCCGGTGCCATTGCGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGAt < 4:805541/150‑1 (MQ=255) gAAGCAACGTCTGCCGGTGCCATTGCGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCAGGCATACCTACGCAAGCACCTACCGGATCg > 2:1066120/1‑150 (MQ=255) aaGCAACGTCTGCCGGTGCCATTGCGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGa > 4:747579/1‑150 (MQ=255) aaGCAACGTCTGCCGGTGCCATTGCGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGa > 2:1078426/1‑150 (MQ=255) aaGCAACGTCTGCCGGTGCCATTGCGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCCACGCAAGCACCCACCGGCTCGa > 4:177191/1‑150 (MQ=255) aGCAACGTCTGCCGGTGCCATTGCGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGAt < 1:1348772/150‑1 (MQ=255) cAACGTCTGCCGGTGCCATTGCGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCAt > 4:967683/1‑121 (MQ=255) ccGGTGCCATTGCGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGt < 3:14102/150‑1 (MQ=255) cGGTGCCAGTGCGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACGCGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGtt < 2:1261478/150‑1 (MQ=255) ggTGCCATTGCGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTg > 3:7594/1‑150 (MQ=255) gTGCCATTGCGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCg < 2:1695559/129‑1 (MQ=255) gTGCCATTGCGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCg > 1:1695559/1‑129 (MQ=255) cATTGCGTTAATCACGGACTGCGCCGGGTTATCATCCCCCGCCACCATATCGACGCCTTCGTCCCCCATTTCAGTAGACACCGCCTGAACACACGCGCCACTCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGtttt < 1:67722/150‑1 (MQ=255) cATTGCGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGtttt > 2:1447630/1‑150 (MQ=255) ttGCGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACAcacgcggtgt > 1:1431490/1‑95 (MQ=255) ttGCGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCa > 2:537096/1‑150 (MQ=255) cGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACGAGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACcg > 1:1441430/1‑150 (MQ=255) cGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACcg > 2:45624/1‑150 (MQ=255) gTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACcgc > 4:746041/1‑150 (MQ=255) tAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGa < 2:916817/150‑1 (MQ=255) aTCACGAACTGCGCCCGGTTATCATCCCACAGAACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCGGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGAtt < 4:1024021/150‑1 (MQ=255) cACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGCCACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTACCGTTGGCTTTCCCCGCGAtttc > 2:975325/1‑149 (MQ=255) cGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCg < 4:7594/150‑1 (MQ=255) aaCTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCa < 4:1012767/150‑1 (MQ=255) tGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACga > 2:762991/1‑150 (MQ=255) gcgcCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACgag > 1:347160/1‑150 (MQ=255) gcCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTg < 4:894702/123‑1 (MQ=255) gcCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTg > 3:894702/1‑123 (MQ=255) gTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCgg < 1:1566694/150‑1 (MQ=255) ttATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAAGCCGGa > 2:1588736/1‑150 (MQ=255) tATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGAt < 1:416264/150‑1 (MQ=255) atcatcCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGAt < 4:759653/102‑1 (MQ=255) atcatcCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGAt > 3:759653/1‑102 (MQ=255) tcatcCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATcg < 1:1022924/150‑1 (MQ=255) atcCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATcgcg > 1:1568173/1‑150 (MQ=255) atcCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATcgcg > 1:1568170/1‑150 (MQ=255) atcCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATcgcg > 2:1551569/1‑150 (MQ=255) ccACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGc > 3:790127/1‑150 (MQ=255) cacaGGACGATATCGATACGCGCGCCACCCATGTCAGTAGACACCGCCTGAACACACGCGCCACGCATCCCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGcc > 2:667801/1‑150 (MQ=255) acaGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCg > 4:749631/1‑150 (MQ=255) gACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCgctgc > 2:518749/1‑150 (MQ=255) tatCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTCCGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTaa < 3:739489/150‑1 (MQ=255) tatCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTaa < 3:689601/150‑1 (MQ=255) tatCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTaa < 1:518749/150‑1 (MQ=255) atCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTATCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAAt > 1:708920/1‑150 (MQ=255) tCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAAtt > 4:629964/1‑150 (MQ=255) gATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTc < 1:764399/150‑1 (MQ=255) gATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTc < 1:1551569/150‑1 (MQ=255) gATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGAACGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCCGCTTTAAttgt > 4:427051/1‑148 (MQ=255) tACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACGCGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCtttcatttcat < 2:1366406/150‑2 (MQ=255) aCGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTCAAt < 1:266000/150‑1 (MQ=255) gCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCGCGCGAACCCGGATCGCGAGCCGCTGCTTTAATTTCAATCa > 1:865109/1‑150 (MQ=255) gCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTCAATCa > 4:597127/1‑150 (MQ=255) tCGCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTCAATCAct > 3:161204/1‑150 (MQ=255) gCCACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTCAATCActtc > 4:55682/1‑150 (MQ=255) cACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCg < 2:129192/114‑1 (MQ=255) cACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCg > 1:129192/1‑114 (MQ=255) cACCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTCAATCActtctt > 3:605142/1‑150 (MQ=255) aCCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTCAATCACttcttc > 1:828484/1‑150 (MQ=255) aCCCAGTTCAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTAATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTCAATCACttcttc > 1:828461/1‑150 (MQ=255) ccAGTTCAGTAGACACCGCCTGAACAAAAAAGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTCAATCACTTCTTCGc > 2:849352/1‑150 (MQ=255) gTTCAGTAGACACCGCCTGAACACACGCGCCCCGCCTACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTCAATCACTTCTTCGCCgc < 4:100388/150‑2 (MQ=255) cAGTAGACACCGCCTGAACACGCGCGCCACGCATACCTACGCAAGCACCTACCGGATCGAt > 3:981187/1‑61 (MQ=255) cAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTCAATCACTTCTTCGCCGAttt > 1:78784/1‑150 (MQ=255) cAGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTCAATCACTTCTTCGCCGAttt > 3:744725/1‑150 (MQ=255) aGTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGTACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTCAATCACTTCTTCGCCGATTTc > 1:434549/1‑150 (MQ=255) gTAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTCAATCACTTCTTCGCCGATTTCt < 2:692365/150‑1 (MQ=255) tAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTCAATCACTTCTTCGCCGATTTCTg > 4:117277/1‑150 (MQ=255) tAGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTCAATCACTTCTTCGCCGATTTCTg < 2:347160/150‑1 (MQ=255) aGACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTCAATCACTTCTTCGCCGATTTCTgg < 1:1185244/150‑1 (MQ=255) gACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCAc < 2:1459960/91‑1 (MQ=255) gACACCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTCAATCACTTCTTCGCCGATTTCTGGc < 2:1047316/150‑1 (MQ=255) acacCGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCGACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTCAATCACTTCTTCGCCGATTTCTGGCa > 4:896981/1‑150 (MQ=255) ccGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTCAATCACTTCTTCGCCGATTTCTGGCACtt < 4:129034/150‑1 (MQ=255) ccGCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTCAATCACTTCTTCGCCGATTTCTGGCACtt < 1:1078426/150‑1 (MQ=255) cGCCTGAACACACGCGCCACGCATACCTACGCCAGCACCTTCCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTCAATCACTTCTTCGCCGATTTCTGGCACTTc < 1:954662/150‑1 (MQ=255) gCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTCAATCACTTCTTCGCCGATTTCTGGCACTTCa < 2:278148/150‑1 (MQ=255) gCCTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTCAATCACTTCTTCGCCGATTTCTGGCACTTCa > 3:883837/1‑150 (MQ=255) cTGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTCAATCACTTCTTCGCCGATTTCTGGCACTTCAAt > 4:449977/1‑150 (MQ=255) tGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTCAATCACTTCTTCGCCGATTTCTGGCACTTCAATa < 1:1066120/150‑1 (MQ=255) tGAACACACGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTCAATCACTTCTTCGCCGATTTCTGGCACTTCAATa < 1:637940/150‑1 (MQ=255) acacacGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTCACTCACTTCTTCGCCGATTTCTGGCACTTCAATACgg < 4:544090/150‑1 (MQ=255) acacGCGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTCAATCACTTCTTCGCCGATTTCTGGCACTTCAATACgg < 1:357794/150‑1 (MQ=255) cacaCGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTCAATCACTTCTTCGCCGATTTCTGGCACTTCAATACGGa > 2:1002354/1‑150 (MQ=255) | CATGGTGTGTTTATCTTCATCCACCACGATAGAAGCAACGTCTGCCGGTGCCATTGCGTTAATCACGAACTGCGCCGGGTTATCATCCCACAGGACGATATCGATACGCTCGCCACCCAGTTCAGTAGACACCGCCTGAACACGCGCGCCACGCATACCTACGCAAGCACCTACCGGATCGATACGTTTATCGTTGGTTTTCACCGCGATTTTCGCACGAGAACCCGGATCGCGAGCCGCTGCTTTAATTTCAATCACTTCTTCGCCGATTTCTGGCACTTCAATACGGA > NC_000913_3_pae_pgi/3316612‑3316901 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |