| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913_3_pae_pgi | 2,995,873 | C→T | pseudogene (148/261 nt) | ygeN ← | pseudogene, orgB family, part of T3SS PAI ETT2 remnant |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_pgi | 2,995,873 | 0 | C | T | 100.0% | 313.8 / NA | 87 | pseudogene (148/261 nt) | ygeN | pseudogene, orgB family, part of T3SS PAI ETT2 remnant |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (47/40); total (47/40) | |||||||||||
TTCAGATCGTTTATCATGTTTATTCTTTTTTTTCAAGTTCTGAGCATAGCAAGCTTATCAAGGGTATAAAATTATCCATCTCATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTCCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTATTTTTTTTCGC > NC_000913_3_pae_pgi/2995729‑2996018 | ttCAGATCGTTTATCATGTTTATTCTTTTTTTTCAAGTTCTGAGCATAGCAAGCTTATCAAGGGTATAAAATTATCCATCTCATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCa > 3:146300/1‑149 (MQ=255)ttCAGATCGTTTATCATGTTTATTCTTTTTTTTCAAGTTCTGAGCATAGCAAGCTTATCAAGGGTATAAAATTATCCATCTCATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCa < 4:146300/149‑1 (MQ=255) aTCGTTTATCATGTTTATTCTTTTTTTTTTTTTTTTTAGCATAGCAAGCTTATCAAGGGTATAAAATTATCCATCTCATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATActc > 2:120080/1‑150 (MQ=255) aTCGTTTATCATGTTTATTCTTTTTTTTTTTTTTTTTAACATAGAAAGCTTATCAAGAGTATAAAATTATCCATCTCATCAATAATGCCTTTTCTATAGCCATCATAATAACCTTGAATAAATTTTTCTTTTTTCTTTTTCTCAATActt > 4:300512/1‑149 (MQ=255) tATCATGTTTATTCTTTTTTTTCAAGTTCTGAGCATAGCAAGCTTATCAAGGGTATAAAATTATCCATCTCATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAAtt > 2:830307/1‑150 (MQ=255) tttATTCTTTTTTTTCAAGTTCTGAGCATAGCAAGCTTATCAAGGGTATAAAATTATCCATCTCATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGc > 4:71006/1‑148 (MQ=255) tttATTCTTTTTTTTCAAGTTCTGAGCATAGCAAGCTTATCAAGGGTATAAAATTATCCATCTCATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGc < 3:71006/148‑1 (MQ=255) tttATTCTTTTTTTTCAAGTTCTGAGCATAGCAAGCTTATCAAGGGTATAAAATTATCCATCTCATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCgg > 1:1501/1‑150 (MQ=255) tATTCTTTTTTTTCAAGTTCTGAGCATAGCAAGCTTATCAAGGGTATAAAATTATCCATCTCATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCggtg < 3:300512/150‑1 (MQ=255) tATTCTTTTTTTTCAAGTTCTGAGCATAGCAAGCTTATCAAGGGTATAAAATTATCCATCTCATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCggtg < 3:273313/150‑1 (MQ=255) ttCTTTTTTTTCAAGTTCTGAGCATAGCAAGCTTATCAAGGGTATAAAATTATCCATCTCATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCggtggt > 3:177477/1‑150 (MQ=255) ttttttttCAAGTTCTGAGCATAGCAAGCTTATCAAGGGTATAAAATTATCCATCTCATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCggtggt < 4:561919/147‑1 (MQ=255) ttttttttCAAGTTCTGAGCATAGCAAGCTTATCAAGGGTATAAAATTATCCATCTCATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCggtggt > 3:561919/1‑147 (MQ=255) ttCAAGTTCTGAGCATAGCAAGCTTATCAAGGGTATAAAATTATCCATCTCATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCa > 3:442080/1‑118 (MQ=255) ttCAAGTTCTGAGCATAGCAAGCTTATCAAGGGTATAAAATTATCCATCTCATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCa < 4:442080/118‑1 (MQ=255) ttCAAGTTCTGAGCATAGCAAGCTTATCAAGGGTATAAAATTATCCATCTCATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCaagaag > 1:41050/1‑150 (MQ=255) cTGAGCATAGCAAGCTTATCAAGGGTATAAAATTATCCATCTCATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGAtttttt < 4:571816/150‑1 (MQ=255) gAGCATAGCAAGCTTATCAAGGGTATAAAATTATCCATCTCATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCt < 4:223127/150‑1 (MQ=255) aGCAAGCTTATCAAGGGTATAAAATTATCCATCTCATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAaga > 1:256382/1‑150 (MQ=255) gCAAGCTTATCAAGGGTATAAAATTATCCATCTCATCAATAATGCCTTTTTTATTTTCTTCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAagag > 2:919212/1‑150 (MQ=255) gCAAGCTTATCAAGGGTATAAAATTATCCATCTCATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAagag > 4:332383/1‑150 (MQ=255) cAAGCTTATCAAGGGTATAAAATTATCCATCTCATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAgaga < 1:830307/150‑1 (MQ=255) cAAGCTTATCAAGGGTATAAAATTATCCATCTCATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAgaga > 4:198173/1‑150 (MQ=255) aTCAAGGGTATAAAATTATCCATCTCATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTAtt < 1:42755/150‑1 (MQ=255) cAAGGGTATAAAATTATCCATCTCATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTAtttc > 3:336990/1‑150 (MQ=255) aaGGGTATAAAATTATCCATCTCATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTAtttct > 1:16943/1‑150 (MQ=255) gggTATAAAATTATCCATCTCATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAAttttt > 2:979226/1‑103 (MQ=255) gggTATAAAATTATCCATCTCATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAAttttt < 1:979226/103‑1 (MQ=255) gggTATAAAATTATCCATCTCATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTAtttcttt > 1:152813/1‑150 (MQ=255) gTATAAAATTATCCATCTCATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCa < 2:152813/150‑1 (MQ=255) aTCTCATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCATTACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCt < 4:302893/114‑1 (MQ=255) aTCTCATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCt > 3:302893/1‑114 (MQ=255) tctcATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAAttt > 1:436801/1‑150 (MQ=255) tctcATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAAttt < 4:336990/150‑1 (MQ=255) ctcATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAAtttt < 2:256382/150‑1 (MQ=255) atcaATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCAt > 3:115279/1‑137 (MQ=255) atcaATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCAt < 4:115279/137‑1 (MQ=255) aataatGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCtttt > 4:344662/1‑150 (MQ=255) ataatGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTAtttcttt < 3:133722/125‑1 (MQ=255) ataatGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTAtttcttt > 4:133722/1‑125 (MQ=255) atGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATc > 4:419484/1‑150 (MQ=255) gCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTAtttcttt < 1:642296/120‑1 (MQ=255) gCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTAtttcttt > 2:642296/1‑120 (MQ=255) gCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATcac > 1:721415/1‑150 (MQ=255) ccTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCAt < 2:177737/127‑1 (MQ=255) ccTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATcaca < 2:853002/150‑1 (MQ=255) ccTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTCCTTTAAGAGAAACTATTTCTTTCAATCCAt > 1:177737/1‑127 (MQ=255) ttttGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCacaac > 4:27390/1‑150 (MQ=255) tttGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCacaaca < 2:720986/150‑1 (MQ=255) gTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTc < 3:148698/133‑1 (MQ=255) gTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTc > 4:148698/1‑133 (MQ=255) taGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCAttt < 3:27390/150‑1 (MQ=255) taGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAAAACCAttt > 3:610808/1‑150 (MQ=255) ccATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCa > 1:1000619/1‑150 (MQ=255) atcatAATAACCTTGAATAAATTTTTCTTCTATCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAAAAATTTTTCTTTTAATAACAACACCATTTGCAgg > 4:249901/1‑150 (MQ=255) tcatAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCacaaca < 4:138009/138‑1 (MQ=255) tcatAATAACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCacaaca > 3:138009/1‑138 (MQ=255) ataataACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCt < 1:867951/82‑1 (MQ=255) ataataACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCt > 2:867951/1‑82 (MQ=255) ataataACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCttt > 1:124558/1‑125 (MQ=255) ataataACCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCttt < 2:124558/125‑1 (MQ=255) taataaCCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAAc > 1:363643/1‑92 (MQ=255) taataaCCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAAc < 2:363643/92‑1 (MQ=255) taataaCCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGAt < 3:419484/150‑1 (MQ=255) aataaCCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTAtttctt < 2:708614/99‑1 (MQ=255) aataaCCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTAtttctt > 1:708614/1‑99 (MQ=255) ataaCCTTGAATAAATTTTTCTTCTCTCTTTTTCTTTATATTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTATGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAggtttttt > 4:278293/1‑144 (MQ=255) taaCCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGAtttt < 1:120080/150‑1 (MQ=255) aCCTTGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTAt < 3:198173/150‑1 (MQ=255) ttGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTAttt < 3:440723/89‑1 (MQ=255) ttGAATAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTAttt > 4:440723/1‑89 (MQ=255) tAAATTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCa < 4:177477/150‑1 (MQ=255) aaaTTTTTCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCAt < 3:212790/150‑1 (MQ=255) ttttCTTCTCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATctct < 3:278293/150‑1 (MQ=255) ttctCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCacaa > 2:824937/1‑110 (MQ=255) ttctCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCacaa < 1:824937/110‑1 (MQ=255) ttctCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTAtttt < 3:344662/150‑1 (MQ=255) ttctCTCTTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTAtttt > 1:435911/1‑150 (MQ=255) tctctTTTTCTCTTTACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTAttttttt > 2:316392/1‑150 (MQ=255) tctctTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCa > 2:380676/1‑118 (MQ=255) tctctTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCa < 1:380676/118‑1 (MQ=255) tctctTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTAttttttt > 3:424639/1‑150 (MQ=255) ctctTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTAtttttttt < 2:1000619/150‑1 (MQ=255) tctTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAAt > 4:509050/1‑100 (MQ=255) tctTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAAt < 3:509050/100‑1 (MQ=255) tctTTTTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTATTTTTTTTc > 1:711785/1‑150 (MQ=255) ttttTCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTATTTTTTTTCGc > 1:727519/1‑150 (MQ=255) ttttCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCAt > 1:101827/1‑78 (MQ=255) | TTCAGATCGTTTATCATGTTTATTCTTTTTTTTCAAGTTCTGAGCATAGCAAGCTTATCAAGGGTATAAAATTATCCATCTCATCAATAATGCCTTTTGTATAGCCATCATAATAACCTTGAATAAATTTTTCTTCTCTCTTTTCCTCAATACTCTGAATTTTTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTATTTTTTTTCGC > NC_000913_3_pae_pgi/2995729‑2996018 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |