New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_pgi	1027524 =	29 (0.920)	4 (0.130)	4/278	4.1	12.5%	coding (250/663 nt)	yccT	UPF0319 family protein
	?	NC_000913_3_vch_pgi	1027537 =	28 (0.920)					coding (237/663 nt)	yccT	UPF0319 family protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCCAGCTTTACCGGAATCGGCGTCGCATCGCCATCCAACAATTCAAGGCGCGGCGCGGCATCAA‑AATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTATCCAGTTCAATGCTGTCCGCACCGCGCAGCAGAGAGCTGGAAACCTTCTTGCCGTC  >  NC_000913_3_vch_pgi/1027382‑1027671                                                                                                                                                |                                                                                                                                                    tCCAGCTTTACCGGAATCGGCGTCGCATCGCCATCCAACAATTCAAGGCGCGGCG‑TCCATCAACAAGGGTTAGCTTCCCGCTCATTCTCCAGGCGGCGCAGGCGAATATTGACCTGGTGGATGAGCTGGGTATTGAAACTGACcagcag                                                                                                                                               >  1:325908/1‑149 (MQ=255)  ccAGCTTTACCGGAATCGGCGTCGCATCGCCATCCAACAATTCAAGGCGCGGCGCGGCATCAA‑AATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGc                                                                                                                                              >  1:91009/1‑149 (MQ=255)          aCCGGAATCGTCGGCGCATCGCCATCCAACAATTCAAGGCGCGGCGCGGCATCAA‑AATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGga                                                                                                                                      <  2:392686/149‑1 (MQ=255)             ggAATCGGCGTCGCATCGTCATCCAACAATTCAAGGCGCGGCGCGGCATCAA‑AATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCCCCAGCGGTGGGGAGat                                                                                                                                   >  1:139665/1‑149 (MQ=255)                  ctgCGTCGCATCGCCATCCAACAATTCTATGAGCGGCGCGGTATCAA‑AATGGTTAGCTTCGCGCTCATTCTCCAGGCGAGCCAGGCGAAACTTGACCTTGTTGATGAGCAGGGTATTAAAACCGACTACCAGCTGCGGGGAGATATACa                                                                                                                              <  1:455507/147‑1 (MQ=255)                             cgtcATCCAACAATTCAAGGCGCGGCGCGGCATCAA‑AATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCa                                                                                                                   <  2:139665/146‑1 (MQ=255)                                 aTCCAACAATTCAAGGCGCGGCGCGGCATCAA‑AATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTAt                                                                                                               >  1:530636/1‑149 (MQ=255)                                     aacaaTTCAAGGCGCGGCGCGGCATCAA‑AATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGa                                                                                                           >  1:144743/1‑149 (MQ=255)                                               gggccggcgcggcATCAA‑AATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGAGGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATc                                                                                                 <  2:84107/145‑1 (MQ=255)                                               ggcgcggcgcGGCATCAA‑AATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATc                                                                                                 <  1:184612/149‑1 (MQ=255)                                                         ggcATCAA‑AATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCaa                                                                                       <  1:116474/149‑1 (MQ=255)                                                           cATCAA‑AATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAAcg                                                                                     >  1:24409/1‑149 (MQ=255)                                                               aa‑aaTGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATGCAGCCGTTCTTCACTCTTGGAAAGATGAATCGTCTTCTCAACGCGaa                                                                                 >  2:376851/1‑149 (MQ=255)                                                                a‑aaTGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGaaa                                                                                >  2:204569/1‑149 (MQ=255)                                                                   aTGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAaca                                                                              <  1:383961/149‑1 (MQ=255)                                                                       ttAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTaa                                                                          <  1:179633/149‑1 (MQ=255)                                                                               ccGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCg                                                                  <  1:105110/149‑1 (MQ=255)                                                                                       tcttCAGGCGAGCCAGGCGAAAGTTGTCCTGGATGTGGAGCTGGGTATTAAAACGGACCACCAGCGGTGCGGAGATATACCGCCCTTCTTCCCTTCTCGGAAGATGAATCTTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTa                                                          <  2:507559/149‑1 (MQ=255)                                                                                       tctcCAGGGGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGTGTATTAAAACTGACCACCAGCGGTGGGGAGATATACCGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCACCGCGACACCCTAACCGATGCGGTCCAttc                                                          <  2:490459/149‑2 (MQ=255)                                                                                       tctcCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTa                                                          <  2:451215/149‑1 (MQ=255)                                                                                          ccAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTATcc                                                       <  2:335153/149‑1 (MQ=255)                                                                                              gCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTATCCAGtt                                                   >  1:506651/1‑149 (MQ=255)                                                                                              gCGAGGCAGGCGAAAATTGACCTAGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTATCCAGtt                                                   <  1:51444/149‑1 (MQ=255)                                                                                                   gcaggcGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTATCCAGTTCAATg                                              <  1:202240/149‑1 (MQ=255)                                                                                                             aTTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTATCCAGTTCAATGCTGTCCGCAc                                    <  1:204569/149‑1 (MQ=255)                                                                                                                 aCCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGCTATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTAATGCGGCCCATTATCAAGTTCAATGCTGTCCGCACcgcg                                >  2:163636/1‑149 (MQ=255)                                                                                                                   cTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTATCCAGTTCAATGCTGTCCCCACCGCgca                              >  2:494402/1‑149 (MQ=255)                                                                                                                                       tAAAACCGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTATCCAGTTCAATGCTGTCCGCACCGCGCAGCAGAGAGCTGGAAACcttc          <  1:190354/149‑1 (MQ=255)                                                                                                                                         aaatgtcccaccaGCGGTGTGGAGATATCTAGCCGTTCTTCACTATTGTAAAGATGATTCGTCTCCTCAACGCGAAACACTAACGGTTGCGGTCCATTAGCCAGTTCAATGCTGTCCTCACCGCGCAGCAGAGAGCTGGAAACcttctt        <  1:33786/142‑1 (MQ=255)                                                                                                                                               accaccAGCGGAGGGTAGATTAACAGCCGTACTTCACTATTAGAAAGATGAAACATCTTCTCAACGCGAAACTCTAACTGATCCGGTCCATTACCCAGTTCACCGCTTTCCGCACCGCTTAGCAGAGAGCTGGAAACCTTCTTGCCGTc  <  2:14059/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                    TCCAGCTTTACCGGAATCGGCGTCGCATCGCCATCCAACAATTCAAGGCGCGGCGCGGCATCAA‑AATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTATCCAGTTCAATGCTGTCCGCACCGCGCAGCAGAGAGCTGGAAACCTTCTTGCCGTC  >  NC_000913_3_vch_pgi/1027382‑1027671

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.