| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | = 1712803 | 25 (0.790) | 4 (0.140) | 4/270 | 4.0 | 14.4% | coding (35/1503 nt) | dtpA | dipeptide and tripeptide permease A |
| ? | NC_000913_3_vch_pgi | = 1712811 | 24 (0.810) | coding (43/1503 nt) | dtpA | dipeptide and tripeptide permease A | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AACATTACCTGCCGTTTCCCCTCCCACTATAACAATTGCGCGTATGTTTTTTATACATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAGGAATTATGGCTGTTTACCTGGTTAAACAACTGGGTATGTCTGAAGCGGATTCA > NC_000913_3_vch_pgi/1712661‑1712945 | aaCATTACCTGCCGTTTCCCCTCCCACTATAACAATTGCGCGTATGTTTTTTATACATAACGCGAGCAAGCACCCCCGTTAATATGGGATGTAAAAAACGTGGTAACAGTGTCCGCTGCACACCAAAAACCAACTTAAAGCGTCAGttt > 1:1428/1‑149 (MQ=255) tttCCCCTCCCACTATAACAATTGCGCGTATGTTTTTTATACATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAaac < 1:162078/149‑1 (MQ=255) tttCCCCTCCCACTATAACAATTGCGCGTATGTTTTTTATACATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGCGTCCACTGCAAACCAAAAACCAACTGAACGCGTCAGTTTGACCGCTTTCAaac > 1:127750/1‑149 (MQ=255) cccTCCCACTATAACAATTGCGCGTATGTTTTTTATACATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAAcc > 1:263122/1‑149 (MQ=255) gcgcGTAGGTTTTTTATACATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCAtc < 1:402809/149‑1 (MQ=255) tATGTTTTTTATACATAACGTGAGAGAGAAACCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCTCTGCAAACTAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTGCAAACAACCGAAGGCGTTCTATCTCATCTtctc < 2:183571/149‑1 (MQ=255) ttttttATACATAACGCGAGAAAGCACCCCCGTTAATATGCGATGTAAAAAAAGAGGTAAAAGTATCCACTGCTAACCAAAAACCAACTGAAAGCGTCAGTTTGCACGCTTTCAAACAACAGAAGGCATTCTATCTCAtcttcttcatt > 2:160677/1‑144 (MQ=255) taCATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGt > 2:236903/1‑94 (MQ=255) taCATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGt < 1:236903/94‑1 (MQ=255) gaAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGAAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCCCGATTGAATTATGGGAACGTTTTg > 2:16932/1‑149 (MQ=255) aCCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACCACCAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCATTCAAACAACAGAAGGCGTTCTATCACATCTCCACGCTTGAGTTATGGGAACGTCTTGCttatt > 2:241142/1‑149 (MQ=255) aCCCCCGTTAATATGGGATGTAAAAAAAGAGGGAAAAGTGTCCACTGCAAACAAAAAACCAACTGAAAGCGTCAGTTTGAGCGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGGGTTATGGGAACGTTTTGGttatt > 1:244695/1‑149 (MQ=255) cccccGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGttatta > 2:22019/1‑149 (MQ=255) gggATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTAAGTTATGGGAACGTTTTTGTTATTACGGCCTACAAGGa > 2:267840/1‑149 (MQ=255) aaaaaaaGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGGTTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAGGAATTATgg > 2:297591/1‑149 (MQ=255) aaaaaaGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAGGAATTATGGc > 1:418296/1‑149 (MQ=255) aaaGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAGGAATTATGGCTGt > 2:497587/1‑149 (MQ=255) gTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAGGAATTATGGCTGTTTACCt < 1:149368/149‑1 (MQ=255) aGTGTCCACTGCAAACCAAAAACCAACCGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATTGGAACGTTTTGGTTATCCCGGCCATTTTGTAATTATGGCTGTTTACCTGGTTa < 2:120556/149‑1 (MQ=255) cTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCTTTTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAGGAATTATGGCTGTTTACCTGGTTAAACAACTg < 1:140255/149‑1 (MQ=255) tGCAAGCCTAAAACCAACTGAAAGCGTCAGTTTGAACGTTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCACGATTGAGTTATGGGAACGTTTTGGTTATCACGGCCTACAAGGAATTATGGCTGTTTACCTGGTTAAACAACTgg < 2:58146/149‑1 (MQ=255) accaaaaaccaaCTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAGGAATTATGGCTGTTTACCTGGTTAAACAACTGGGTATg > 1:62886/1‑149 (MQ=255) ccaaCTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGCCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAGGAATTATGGCTGTTTACCTGGTTAAACAACTGGGTATGTCTGAAGc < 1:103817/149‑1 (MQ=255) aCTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAGGAATTATGGCTGTTTACCTGGTTAAACAACTGGGTATGTCTGAAGCGGa < 2:440140/149‑1 (MQ=255) aaaGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTAGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAGGAATTATGGCTGTTTACCTGGTTAAACAACTGGGTATGTCTGAAGCGGCTTCa > 1:477109/1‑149 (MQ=255) | AACATTACCTGCCGTTTCCCCTCCCACTATAACAATTGCGCGTATGTTTTTTATACATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAGGAATTATGGCTGTTTACCTGGTTAAACAACTGGGTATGTCTGAAGCGGATTCA > NC_000913_3_vch_pgi/1712661‑1712945 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |