Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913_3_vch_pgi 2,393,422 Δ13 bp coding (1613‑1625/1842 nt) nuoL ← NADH:ubiquinone oxidoreductase, membrane subunit L

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913_3_vch_pgi 2393422 2393434 13 26 [0] [0] 26 nuoL NADH:ubiquinone oxidoreductase, membrane subunit L

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_vch_pgi = 23934210 (0.000)26 (0.830) 24/286 0.4 100% coding (1626/1842 nt) nuoL NADH:ubiquinone oxidoreductase, membrane subunit L
?NC_000913_3_vch_pgi 2393435 = 0 (0.000)coding (1612/1842 nt) nuoL NADH:ubiquinone oxidoreductase, membrane subunit L

TCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGGTAATTTCCAGGGTCAACA  >  NC_000913_3_vch_pgi/2393287‑2393578
                                                                                                                                                    |                                                                                                                                               
cagatagccgttctcacttaacagcatacctttacctgcaaagcgggaaaggacagccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagc                                                                                                                                                 <  2:300878‑M2/1‑1 (MQ=255)
              cccttaatagcagaccttttcctgcaaagcgggaaaggacagccgggatgttaatcggcaagcccggcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAgg                                                                                                                                   <  1:128509‑M2/15‑1 (MQ=255)
                   aacagcagccctttacctgcaaagcgggaaaggacagccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGccc                                                                                                                              <  1:361464‑M2/20‑1 (MQ=255)
                             ctttacctgcaaagcgggaaaggacagccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcactacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCCCCACGTGCCCAGCAGACGGc                                                                                                                    >  1:130368‑M2/120‑149 (MQ=255)
                                            gggaaaagacagccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTgg                                                                                                     <  2:537052‑M2/45‑1 (MQ=255)
                                                 aggacagtcggggggtgcatcattgagttcagcggatcgcgtttcaccaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATg                                                                                                <  2:161932‑M2/50‑1 (MQ=255)
                                                  ggacagccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATgg                                                                                               <  2:426215‑M2/51‑1 (MQ=255)
                                                    acagccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGTCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAg                                                                                             <  1:273361‑M2/53‑1 (MQ=255)
                                                    acagccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAg                                                                                             <  1:83474‑M2/53‑1 (MQ=255)
                                                    aaagccgggatggtcatcattgagttcagcggatcgggtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAg                                                                                             <  2:407188‑M2/53‑1 (MQ=255)
                                                             aggttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCaga                                                                                    <  1:185891‑M2/62‑1 (MQ=255)
                                                                   atcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGt                                                                              <  1:499588‑M2/68‑1 (MQ=255)
                                                                               agcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCAGGCGCACTGTTGGCGCTGGGGGTCACCAGAGTACGTTTACCcaggcac                                                                  >  2:385685‑M2/70‑149 (MQ=255)
                                                                                     tcgcgtttcaccaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAg                                                            <  1:385685‑M2/86‑1 (MQ=255)
                                                                                             cagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCcag                                                    >  1:308209‑M2/56‑149 (MQ=255)
                                                                                                       gcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCg                                          <  1:325238‑M2/104‑1 (MQ=255)
                                                                                                        caataccctggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGTACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGa                                         <  2:405473‑M2/105‑1 (MQ=255)
                                                                                                           tacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGACACCAGCAGACTGCCCGGCACACTGTTTGCGATGGAGGGCACCAGAGTACGTTTACCCAGCCACAGCCGGGCTGCCAGCATAATGACGacca                                      >  1:47914‑M2/42‑149 (MQ=255)
                                                                                                               caggaacggcttgacgaacactttgtcatacagccagCGTTGTac                                                                                                                                          >  1:61232‑M2/38‑45 (MQ=255)
                                                                                                               caggaacggcttgacgaacactttgtcatacagccagCGTTGTac                                                                                                                                          <  2:61232‑M2/8‑1 (MQ=255)
                                                                                                                 ggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGa                                <  1:12860‑M2/114‑1 (MQ=255)
                                                                                                                           gacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCaga                      >  1:317039‑M2/26‑149 (MQ=255)
                                                                                                                                acactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGCCGGACAGCAGAATGCCGACCACCGCGACCACGCCCGAGCTaa                 >  2:301982‑M2/21‑149 (MQ=255)
                                                                                                                                    tttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTCCCAGCAGAATGCCGACCACCGCGACCACGCAAGAGCGAATTTc             >  2:337007‑M2/17‑149 (MQ=255)
                                                                                                                                       gtcatacagccagCGTTGTACGACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGGTAATTTCCAg          <  2:130368‑M2/136‑1 (MQ=255)
                                                                                                                                               gccagCGTTGTACCCCCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGGTAATTTCCAGGGTCAACa  <  1:72244‑M2/144‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                               
TCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGGTAATTTCCAGGGTCAACA  >  NC_000913_3_vch_pgi/2393287‑2393578

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: