Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913_3_vch_pgi 2,393,422 Δ13 bp coding (1613‑1625/1842 nt) nuoL ← NADH:ubiquinone oxidoreductase, membrane subunit L

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913_3_vch_pgi 2393422 2393434 13 20 [0] [0] 20 nuoL NADH:ubiquinone oxidoreductase, membrane subunit L

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_vch_pgi = 23934210 (0.000)20 (1.100) 16/286 0.2 100% coding (1626/1842 nt) nuoL NADH:ubiquinone oxidoreductase, membrane subunit L
?NC_000913_3_vch_pgi 2393435 = 0 (0.000)coding (1612/1842 nt) nuoL NADH:ubiquinone oxidoreductase, membrane subunit L

ATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGG  >  NC_000913_3_vch_pgi/2393277‑2393560
                                                                                                                                                |                                                                                                                                           
aTAGCTGTTCTCACGTAACGGCAGACCTGTACCTGCAAAGCGGGAAAGGACAGACGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCCTGACGAACACTTTGTCATACAGCCAGcgtt                                                                                                                                         <  2:76102‑M1/149‑5 (MQ=255)
aTAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgtt                                                                                                                                         <  1:216583‑M1/149‑5 (MQ=255)
              ttAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATGGCGTTTCAGCAACCCGGCAATACCCAGGAACGGCTTGACGAACACTTTCTCATACAGCCAGcgctgtacccccaggtgc                                                                                                                           >  2:109655‑M1/1‑131 (MQ=255)
              ttAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgc                                                                                                                           >  1:306309‑M1/1‑131 (MQ=255)
                aaCAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgccc                                                                                                                         <  1:70089‑M1/149‑21 (MQ=255)
                               acgctaaagcgggAAAGGATCGCCGGGATGTTCATCATTGAGTTCAGCGTATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCGTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggc                                                                                                          <  1:148213‑M1/144‑36 (MQ=255)
                                 tGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTCTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttataccccccagtgcccggcagacgccccggcgc                                                                                                        >  2:249422‑M1/1‑112 (MQ=255)
                                     aaGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcgcagcagacggcccggcgcactg                                                                                                    >  1:323589‑M1/1‑108 (MQ=255)
                                          ggAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggc                                                                                               <  2:306309‑M1/149‑47 (MQ=255)
                                                     ccGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtca                                                                                    >  2:208107‑M1/1‑92 (MQ=255)
                                                             ttCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtacaaccaggtgcgcagcagacggcccggcgcactgttggcgatggaggtccccagagca                                                                            >  2:278059‑M1/1‑84 (MQ=255)
                                                                                  tCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccag                                                       >  1:210169‑M1/1‑63 (MQ=255)
                                                                                      gTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCAAACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttccccagccacaggccggccg                                                   >  1:265423‑M1/1‑59 (MQ=255)
                                                                                       tttCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATAAAGCCAGcgttgtaccaccaggtgcccagcagacggcacggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctgc                                                  >  1:97955‑M1/1‑58 (MQ=255)
                                                                                                                             acacTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtaagtttacccagccacagccaggctgccagcagaatgccgaccaccgcgaccacgccagaggtaa            <  1:208107‑M1/149‑130 (MQ=255)
                                                                                                                                 tttGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctgccagcagaatgccgaccaccgcgaccacgccagaggtaatttc        >  1:226125‑M1/1‑16 (MQ=255)
                                                                                                                                       aTACAGCCAGcgttgtacctccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccggggtacgtttacccagccacagccaggctgccagcagaatgccgaccaccgcgaccacgccagaggtaatttctcgggg  >  2:273417‑M1/1‑10 (MQ=255)
                                                                                                                                       aTACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctgccagcagaatgcc                                      <  2:167313‑M1/113‑104 (MQ=255)
                                                                                                                                       aTACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctgccagcagaatgcc                                      >  1:167313‑M1/1‑10 (MQ=255)
                                                                                                                                       aTACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctgccagcacaatcccgcacaccgcggccgcgccagagggaatttccagggg  >  2:181640‑M1/1‑10 (MQ=255)
                                                                                                                                                |                                                                                                                                           
ATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGG  >  NC_000913_3_vch_pgi/2393277‑2393560

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: