| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | = 1636407 | 20 (0.900) | 4 (0.200) | 4/252 | 2.3 | 17.9% | intergenic (‑40/‑349) | nohQ/ynfO | pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage |
| ? | NC_000913_3_vch_pgi | = 1636432 | 19 (0.960) | intergenic (‑65/‑324) | nohQ/ynfO | pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCCTTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCC > NC_000913_3_vch_pgi/1636261‑1636552 | cccTCGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACagag < 2:74174/149‑1 (MQ=255) agctggtaTTCCCTGTTCCTGCCAGTCTAGAACGGTACGGATAATCGCACTCATAATGTCAGCCAGCTGTTTTTTGTTGACTTCCATTGTGCATTCCACGGCCAAAAGCAGAGAAAGGAAACGACAGCGGCCCAAAAGCTCCTTTTCAg < 2:146773/142‑1 (MQ=14) aCGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGc < 1:285681/149‑1 (MQ=255) agtccCTGTTCCTGCCAGTTCTGAATGGTACGGATAATGGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCGAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACctgt > 2:116603‑M2/3‑145 (MQ=255) cTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGgtgctgaaaacgagcttttgggcctctgtcgtt > 2:314434‑M1/1‑115 (MQ=255) cTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGgtgctgaaaacgagcttttgggcctctgtcgtt < 1:314434‑M1/148‑34 (MQ=255) cTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACctgtcgttt < 1:319605‑M2/149‑10 (MQ=255) cTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACctgtcgtttcctttc < 1:126286‑M2/149‑16 (MQ=255) tgcggAATGGTACGGATACCCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAg < 1:313974/145‑1 (MQ=255) ggctACTTGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGTGGGTATTTtaaa < 2:46624/146‑1 (MQ=255) ggATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTtaaa > 2:259468/1‑149 (MQ=255) ggATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTtaaa < 2:37290/149‑1 (MQ=255) ttttGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTATATTACGCCATAGAAGAACGGa > 2:92174/1‑149 (MQ=14) ttttGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAAAACGGa > 1:168969/1‑149 (MQ=255) gtttGTCGAATGCCATTGTTAATTTCACGGGCAAAAACAGAGAAAGGAAATCACAGAGGCCCAAAAGCTCGTTTTCATCACCTGTCGTTTTCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGa < 2:174718/148‑1 (MQ=14) ttgACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGAGGAAGAAAAACGGAAATGc > 1:231493/1‑149 (MQ=255) cgACATCCATTGGTCATTCCACCGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCACGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGcc < 1:92174/148‑1 (MQ=255) gACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCCt < 1:259468/149‑1 (MQ=255) ccATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTTAGACAAAGAAGAACGCAAATGcgtgaacc > 1:236648/1‑142 (MQ=17) ttGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCCTTAAACCgg > 1:23113/1‑149 (MQ=255) ttCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCAGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCCTTAAACCGGaaa > 2:93441/1‑149 (MQ=255) tCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAAGGGAAATGCCTTAAACCGGaaaa > 1:33335/1‑149 (MQ=255) aaaaaCAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCCTTAAACCGGAAAATTTTCATAAATAg > 1:72078/1‑149 (MQ=255) aCAGAGAAAGGAAACGATAGgtgctgaaaacgagcttttgggcctctgtcgtttcctttctctgt > 2:351722‑M1/1‑20 (MQ=255) aCAGAGAAAGGAAACGATAGgtgctgaaaacgagcttttgggcctctgtcgtttcctttctctgt < 1:351722‑M1/65‑46 (MQ=255) aCAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACctatcgtttcctttctctgt > 2:351722‑M2/1‑45 (MQ=255) aCAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACctatcgtttcctttctctgt < 1:351722‑M2/65‑21 (MQ=255) gaAAGGAAACGACAGgtgctgaaaacgagcttttgggcctctgtcgtttcctttctctgtttttggccgtggaatgaacaatggaagtcaacaaaaagcagctggctgacattttcggtgcgagtatccgtaccattcagaactggcag < 1:126286‑M1/149‑135 (MQ=255) aaaCGACAGgtgctgaaaacgagcttttgggcctctgtcgtttcctttctctgtttttggccgtggaatgaacaatggaagtcaacaaaaagcagctggctgacattttcggtgcgagtatccgtaccattcagaactggcaggaacag < 1:319605‑M1/149‑141 (MQ=255) aaCGACAGAGGCCCAAAAGCTCGTTTTCAGCACctgtcgtttcctttctctgtttttggccgtggaatgaacaatggaagtcaacaaaaagcagctggctgacattttcggtgcgagtatccgtaccattcagaactggcaggaacag > 2:314434‑M2/1‑33 (MQ=255) aaCGACAGAGGCCCAAAAGCTCGTTTTCAGCACctgtcgtttcctttctctgtttttggccgtggaatgaacaatggaagtcaacaaaaagcagctggctgacattttcggtgcgagtatccgtaccattcagaactggcaggaacag < 1:314434‑M2/148‑116 (MQ=255) aaCGACAGAGGCCCAAAAGCTCGTTTTCAGCAACTGTCGTTTCCTTGCGTTTAAGGGGGGATTTTAAATATAAAGATTAAGTTACGAGCAAGAAAACGGGAAATACATAAACCCGGAAAATTTGCCTAAATAGCGAAAAAACGCGAGGt > 2:187453/1‑149 (MQ=255) aCGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTGACGACGAAGAAGAACGGCAATGCCTGAAACGGGAAAATGTTCATAAGTAGCGAAAACCCGCGAGGTc > 1:10760/1‑149 (MQ=14) aCAGgtgctgaaaacgagcttttgggcctctgtcgtttcctttctctgtttttcgccgtggaatgaacaatggaagtcaacaaaaagcagctggctgacattttcggtgccattatccgtaccattcagaactggcaggaacagggact > 2:116603‑M1/1‑4 (MQ=255) | CCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCCTTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCC > NC_000913_3_vch_pgi/1636261‑1636552 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |