| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913_3_vch_pgi | 2,393,422 | Δ13 bp | coding (1613‑1625/1842 nt) | nuoL ← | NADH:ubiquinone oxidoreductase, membrane subunit L |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | = 2393421 | 1 (0.050) | 15 (0.690) | 15/288 | 0.5 | 93.8% | coding (1626/1842 nt) | nuoL | NADH:ubiquinone oxidoreductase, membrane subunit L |
| ? | NC_000913_3_vch_pgi | 2393435 = | 1 (0.050) | coding (1612/1842 nt) | nuoL | NADH:ubiquinone oxidoreductase, membrane subunit L | |||||
AGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_vch_pgi/2393296‑2393421‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGGTAATTTCCAGGGTCAACA > NC_000913_3_vch_pgi/2393435‑2393578 AGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATGGAGTTAAGCGGAGCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACGTAGCCATCAAGCCAGCGTTGTACCACCACGCCCCCAGC > 2:323576/1‑149 TTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGCGTTGTACCACCAGGTGCCCAGCCGACGGCC < 1:81696/149‑1 gctGGAAAGGACAGCCGGGATGTTCATCAGTGAGTTCAGCGGTTCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTT < 2:147327/146‑1 GGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCATGCAATACCCAGGAAGGGCGTGACGAACACTGTGTCATACACCCAGCGTTGTACCACCAGGTGCCCAGCAGGCGGCCCGGCGCACTGTTGG < 2:259427/149‑1 AGGAAAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATG < 2:178118/149‑1 GACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTGTGTCATACAGCCCGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGA < 1:256020/149‑1 TTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGCACGGCTTGACGAACACTTTGTCATACAGCCAGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTA > 1:251951/1‑149 gTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTAC < 1:346107/148‑1 TTTCAGCAACCGGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGGACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGC < 2:43791/149‑1 TTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACCCTTTGTCATACAGCCAGCGTTGGCCCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGCTGGAGGTCACCAGAGCACGATTCCGCAGCCACCCCCACGCTcc > 2:380132/1‑147 CCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGCGTTGTACCACCAGGTGCACAGCAGACGGCCCGGAGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCG > 1:85008/1‑149 TTGGCGAACACTTTGTCATACAGCCTGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCGGCCACAGCCAGGCTGTCAGCGGTATGCCGACCACCGCGACCACGCCA < 2:361205/149‑1 gaaGAACACTCTGTCATACAGCCAGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTATTGGCGATGGAGGTCACCAGAGGACGTTTACCCAGCCACAGCCACGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGA < 2:18602/146‑1 TCATACAGCCAGCGTTTTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGTCTGCCAACAGAATGCCGACCACCGCGACCACGCCAGAGGTAATTTCCAGG < 2:164341/149‑1 GCCAGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGGTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCGGCGGTAATTTCCAGGGTCAACA > 2:300393/1‑149 AGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_vch_pgi/2393296‑2393421‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGGTAATTTCCAGGGTCAACA > NC_000913_3_vch_pgi/2393435‑2393578 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |