New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 276633742 (0.990)5 (0.120) 5/272 5.3 11.0% coding (420/1074 nt) rnlA CP4‑57 prophage; RNase LS
?NC_000913_3_hsa_tpiA = 2766341 41 (1.010)coding (424/1074 nt) rnlA CP4‑57 prophage; RNase LS
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACAGGGTTTGGAGAAA  >  NC_000913_3_hsa_tpiA/2766189‑2766484
                                                                                                                                                    |                                                                                                                                                   
ccATCAATCCTGCTTAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATGAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCCTACCGTAGTGTGGaaa                                                                                                                                                     <  1:659657/149‑1 (MQ=255)
  gtCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAGAat                                                                                                                                                   >  1:531528/2‑149 (MQ=255)
   tCAATCCTGCTGAATGTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAatt                                                                                                                                                  >  1:73062/1‑149 (MQ=255)
           gctgAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTccac                                                                                                                                          <  1:667547/149‑1 (MQ=255)
                   tGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATCTAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATc                                                                                                                                  <  2:350206/149‑1 (MQ=255)
                           tAAATATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGaa                                                                                                                          <  2:757837/149‑1 (MQ=255)
                                  ggTACTGAAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTTTCCGGACGATTTGACtg                                                                                                                   >  2:578222/1‑149 (MQ=255)
                                   gTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACtgt                                                                                                                  <  2:679089/149‑1 (MQ=255)
                                       tGCAAGGATTTGTAGAGACAAGCGTTCTACATAGTCGTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGc                                                                                                              >  2:732317/1‑149 (MQ=255)
                                         cAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATCGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGACACTTATTTCCACCAGCTTTCAGGACGGATTGACTGTGAGCCt                                                                                                            >  2:274990/1‑149 (MQ=255)
                                               tttGTAGAGACAAGCGTTCAACCTGTACTTGAGCTACCACCACATGAATCGCACACAGGAACCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAACTATTTCCACCAGCTATCCGGACGAATTGACTGTGAGCCTGCatac                                                                                                      >  2:160295/1‑148 (MQ=255)
                                                  gTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATcac                                                                                                   >  2:179076/1‑149 (MQ=255)
                                                   tAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATcaca                                                                                                  >  1:722312/1‑149 (MQ=255)
                                                      agaCAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCacaaca                                                                                               <  2:440286/149‑1 (MQ=255)
                                                        aCAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACATCAgg                                                                                             >  2:204997/1‑149 (MQ=255)
                                                                      tGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACATGTAAGCCCCAGCTTc                                                                               >  2:1173/1‑149 (MQ=255)
                                                                         aCTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAgg                                                                            <  1:179076/149‑1 (MQ=255)
                                                                         aCTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAgg                                                                            <  2:501370/149‑1 (MQ=255)
                                                                          cTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAggg                                                                           >  1:533685/1‑149 (MQ=255)
                                                                                   tCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCt                                                                  >  1:279075/1‑149 (MQ=255)
                                                                                     agcagATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGt                                                                >  2:752038/1‑149 (MQ=255)
                                                                                      gcagATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTc                                                               >  2:321129/1‑149 (MQ=255)
                                                                                         gATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATg                                                            <  1:752038/149‑1 (MQ=255)
                                                                                            gAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTa                                                         <  1:56750/149‑1 (MQ=255)
                                                                                             actCGCATATAGAGTTCAGAAAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTCGCATGTTAc                                                        >  2:69993/3‑149 (MQ=255)
                                                                                               tCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACag                                                      >  1:337619/1‑149 (MQ=255)
                                                                                                cGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACaga                                                     <  1:373517/149‑1 (MQ=255)
                                                                                                cGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACaga                                                     <  1:456724/149‑1 (MQ=255)
                                                                                                       agagTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAGGCTCCAGATTCAGGGCCGACCGCTGTCCTGTTACAGAGATTTCa                                              >  1:412412/1‑149 (MQ=255)
                                                                                                           ttCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACagag                                                    <  1:405608/139‑1 (MQ=255)
                                                                                                           ttCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACagag                                                    >  2:405608/1‑139 (MQ=255)
                                                                                                                     acTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCa                                <  2:73062/149‑1 (MQ=255)
                                                                                                                        ctcGTAACGCGCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGcc                             <  2:74510/149‑1 (MQ=255)
                                                                                                                           gTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTACATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTg                          >  1:616561/1‑149 (MQ=255)
                                                                                                                           gTAACGCTCATACCGTAGTGTGGAAAATTATTTCCAACAGCTATCAGGACGAATTGACTGTGAGCCTGCGTATCACAACAGGTAAGCTCCCGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACGTGGCAGCCCTg                          >  1:28689/1‑149 (MQ=255)
                                                                                                                                gttCATAGCGTAGGTTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCACATCACAACCGGTAAGCTCCCGATTCAGGGCCGCCCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTCCTTGa                     <  2:389181/147‑1 (MQ=255)
                                                                                                                                gCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGa                                                                                  <  2:169647/88‑1 (MQ=255)
                                                                                                                                gCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGa                                                                                  >  1:169647/1‑88 (MQ=255)
                                                                                                                                  tCATCCCGTAGTGGGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGAtt                   <  1:99136/149‑1 (MQ=255)
                                                                                                                                      aCCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACa               <  2:337619/149‑1 (MQ=255)
                                                                                                                                        cGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACAgg             >  1:280087/1‑149 (MQ=255)
                                                                                                                                        cGTAGTGTGGAAAATTATTTCCACAAGATATCTGTACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACAgg             <  2:725088/149‑1 (MQ=255)
                                                                                                                                                   aaaTTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACAGGGTTTGGAGaaa  <  1:703492/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
CCATCAATCCTGCTGAATTTGAGCAGGTAAATATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAGAGTTCAGAGAACACTCTCGTAACGCTCATACCGTAGTGTGGAAAATTATTTCCACCAGCTATCAGGACGAATTGACTGTGAGCCTGCATATCACAACAGGTAAGCTCCAGATTCAGGGCCGACCGCTGTCATGTTACAGAGTTTTCACGTTTAACTTGGCAGCCCTGCTTGATTTACAGGGTTTGGAGAAA  >  NC_000913_3_hsa_tpiA/2766189‑2766484

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.