New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 3944978NA (NA)8 (0.200) 6/274 4.8 18.8% noncoding (1275/2904 nt) rrlC 23S ribosomal RNA of rrnC operon
?NC_000913_3_hsa_tpiA = 4038811 36 (0.850)noncoding (1293/2905 nt) rrlA 23S ribosomal RNA of rrnA operon
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGA  >  NC_000913_3_hsa_tpiA/4038664‑4038876
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aaTGCGCCGAATCTGCGGCAGCGACACGATGGGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTc                                                                   <  2:188191/148‑1 (MQ=255)
 aTGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGGGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGGATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCGGCTCg                                                                  >  1:299679/1‑149 (MQ=255)
 aTGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTGATCTTGTGATGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCTGCtgg                                                                  >  1:404078/1‑147 (MQ=14)
 aTGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCg                                                                  >  2:562629/1‑149 (MQ=255)
   gCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGAATTAGGGAACGATAAAGCGGGTGAAAAGCCCGCTCGcc                                                                <  1:562629/149‑1 (MQ=255)
      ccGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGa                                                             >  1:678811/1‑149 (MQ=40)
       cGAAGCTGCGGCAGCGCCACTATGTGTTTGTGGGTAGTGGAGCGTTCTGCAAGCCTGTCAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGaa                                                            <  2:190963/149‑1 (MQ=14)
       cGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGGGACGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAGCGAAAAAGCGGGTGAAAAGCCCGCTCGCCgaga                                                            >  2:329355/1‑146 (MQ=14)
           gCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGAcc                                                        >  1:111765/1‑149 (MQ=255)
               cGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAGGACCAAgg                                                    >  2:409922/1‑149 (MQ=255)
                   aGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTc                                               <  1:457689/149‑1 (MQ=255)
                   aGCGACACTATGGGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTc                                               <  2:263548/149‑1 (MQ=38)
                     cGACTCTATGTGTTGTTGGGTAGCGGAGCGTTCTGTAAGCCTGTGCAGGTGTGCTGTGAGGCGTGCTGGAGGTATCAGGAGTGCGAATGCTCACTTAACTAACGCTAAAGCGGGTGAAACGCCCGCTCGCCGGAAGACCAAGGGTTCCt                                             <  1:639965/149‑1 (MQ=11)
                      gACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGATGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTg                                            >  1:698188/1‑149 (MQ=255)
                      gACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTg                                            >  1:706546/1‑149 (MQ=38)
                        cacCATGGGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTc                                          <  1:268772/149‑1 (MQ=17)
                           tATGTGTTGGTGTGTGGAGCAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCaa                                       >  2:546062/1‑149 (MQ=11)
                            aTGTGTTGGTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGATGACATAACTAACGACAAAGCGGGTGGAAAGCCCGCTCGCCGGAAGACCCAGGGTTCCTGTCCAAc                                      <  2:160228/149‑1 (MQ=11)
                              gtgtTGTTGGGTAGGGGAGCGTTCTGTAAGCCGGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACgg                                    >  2:442021/1‑148 (MQ=18)
                                gttgttGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTa                                  >  2:293973/1‑149 (MQ=32)
                                 ttgttgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTaa                                 >  1:62400/1‑149 (MQ=32)
                                       ggTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAATGGTTCCTGTCCAACGTTAATCgcgg                           >  2:395939/1‑149 (MQ=17)
                                       ggTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAAAGTTAATCgggg                           >  2:535700/1‑149 (MQ=17)
                                           ggggAGCGGTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAGAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAgg                       <  2:710695/149‑1 (MQ=17)
                                               aGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGa                   <  1:503599/149‑1 (MQ=32)
                                                gCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAg                  <  2:62400/149‑1 (MQ=32)
                                                  gTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTc                >  1:564808/1‑149 (MQ=32)
                                                  gTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTc                <  2:678811/149‑1 (MQ=32)
                                                     cTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAc             <  1:212976/149‑1 (MQ=32)
                                                      tGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGATGGAGTGATCAGAAGTGCGAATGCTGACATAAGTCAAGTTAAAGCGGGTGAAAAGAGCGCTCGCCGGAAGAGAAGGGTGTCCTGTCCAACGTTAATCGGGGCAGGGTGCGTGGAcc            >  2:189780/1‑149 (MQ=11)
                                                      tGTAAGCCTGTGAAGGTGTGCTGTGAGGCATCCTGGAGGTATCAGAAGTGCGGATGCTGACATAAGTAACTATAAAGCAGGAGAAAACACAGCTCACCGCCAGAGCACGGGATCCTATCCAGCATTAATCGGGACTGGGTGaagcggcc            >  2:609290/1‑142 (MQ=2)
                                                       gTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAccc           >  1:602116/1‑149 (MQ=32)
                                                           gCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTaa       >  2:469378/1‑149 (MQ=32)
                                                             cTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGCTTCCTGTCCAACGTTAAAAGGGGCAGGGTGAGTCGACCCATAggg     >  2:155197/1‑149 (MQ=11)
                                                              tgtgAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGAGCGAGGGGTCCTGTCCACCGTTAATCGGGGCAGGGTGAGGCGGCCCGTAAGGc    >  1:101355/1‑149 (MQ=11)
                                                              tgtgAAGGTGGGCTGGGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGc    <  1:154226/149‑1 (MQ=17)
                                                                tgAAGGGGTGCTGTTAGGCATGCGGGAGGTATCAGAAGTGCGAATGCTGACATAAGTACCGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGa  <  2:343161/149‑1 (MQ=2)
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CATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGA  >  NC_000913_3_hsa_tpiA/4038664‑4038876

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.